cohort.py

import ipywidgets as widgets
import sys
from pathlib import Path
import os
import importlib
import shutil
import time
import yaml


def task_cohort(task,mimic_path,path_benchmark, config):
    sys.path.append('/preprocessing/day_intervals_preproc')
    sys.path.append('/utils')
    sys.path.append('/preprocessing/hosp_module_preproc')
    sys.path.append('/model')
    import day_intervals_cohort_v2
    import day_intervals_cohort
    import feature_selection_icu
    import data_generation_icu_modify
    root_dir = path_benchmark
    with open(config) as f:
        config = yaml.safe_load(f)
    version_path = mimic_path
    version = version_path.split('/')[-1][0]
    print(version)

if __name__ == '__main__':
    task = sys.argv[1]
    mimic_path = sys.argv[2]
    path_benchmark = sys.argv[3]
    config = sys.argv[4]
    task_cohort(task, mimic_path, path_benchmark, config)