Update readme.md
Browse files
readme.md
CHANGED
@@ -52,8 +52,8 @@ Replace the `<variable>` placeholders with the corresponding values specific to
|
|
52 |
- `predW` (integer): Specifies the prediction window. Valid values depend on the task:
|
53 |
- For Phenotype, Length of Stay, or Readmission tasks: 0
|
54 |
- For Mortality task: Between 2 and 8 (inclusive)
|
55 |
-
- `diagnosis`, `output`, `chart`, `proc`, `meds` (boolean): Specifies whether to include each respective
|
56 |
-
- `disease_filter` (string): Specifies the disease filter. Valid values:
|
57 |
- Heart Failure
|
58 |
- COPD
|
59 |
- CKD
|
@@ -64,7 +64,7 @@ Replace the `<variable>` placeholders with the corresponding values specific to
|
|
64 |
- Convert ICD-9 to ICD-10 and group ICD-10 codes
|
65 |
- Keep both ICD-9 and ICD-10 codes
|
66 |
- Convert ICD-9 to ICD-10 codes
|
67 |
-
- `select_diag`, `select_med`, `select_proc`, `select_out`, `select_chart` (boolean): Specifies whether to
|
68 |
- `outlier_removal` (string): Specifies the outlier removal method. Valid values:
|
69 |
- No outlier detection
|
70 |
- Impute Outlier (default:98)
|
@@ -107,3 +107,4 @@ Feel free to modify the values to fit your specific requirements.
|
|
107 |
Provide the full path of your configuration file while calling the loading dataset function with the parameter config_path=`<path_to_config_file>`.
|
108 |
To use the `check_config` function, pass the task name and the path to your configuration file as arguments:
|
109 |
|
|
|
|
52 |
- `predW` (integer): Specifies the prediction window. Valid values depend on the task:
|
53 |
- For Phenotype, Length of Stay, or Readmission tasks: 0
|
54 |
- For Mortality task: Between 2 and 8 (inclusive)
|
55 |
+
- `diagnosis`, `output`, `chart`, `proc`, `meds` (boolean): Specifies whether to include each respective feature. Valid values: True or False.
|
56 |
+
- `disease_filter` (string): Specifies the disease filter if focusing on a cohort with a specific chronic disease. Valid values:
|
57 |
- Heart Failure
|
58 |
- COPD
|
59 |
- CKD
|
|
|
64 |
- Convert ICD-9 to ICD-10 and group ICD-10 codes
|
65 |
- Keep both ICD-9 and ICD-10 codes
|
66 |
- Convert ICD-9 to ICD-10 codes
|
67 |
+
- `select_diag`, `select_med`, `select_proc`, `select_out`, `select_chart` (boolean): Specifies whether to do features selection as describe in 'https://github.com/healthylaife/MIMIC-IV-Data-Pipeline' benchmark. Valid values: True or False.
|
68 |
- `outlier_removal` (string): Specifies the outlier removal method. Valid values:
|
69 |
- No outlier detection
|
70 |
- Impute Outlier (default:98)
|
|
|
107 |
Provide the full path of your configuration file while calling the loading dataset function with the parameter config_path=`<path_to_config_file>`.
|
108 |
To use the `check_config` function, pass the task name and the path to your configuration file as arguments:
|
109 |
|
110 |
+
For more understanding of the configuration please refer to 'https://github.com/healthylaife/MIMIC-IV-Data-Pipeline'.
|