Update Mimic4Dataset.py
Browse files- Mimic4Dataset.py +5 -0
Mimic4Dataset.py
CHANGED
@@ -20,6 +20,7 @@ _HOMEPAGE = "https://huggingface.co/datasets/thbndi/Mimic4Dataset"
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_CITATION = "https://proceedings.mlr.press/v193/gupta22a.html"
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_URL = "https://github.com/healthylaife/MIMIC-IV-Data-Pipeline"
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_DATA_GEN = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/data_generation_icu_modify.py'
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_COHORT = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/cohort.py'
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_CONFIG_URLS = {'los' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/los.config',
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'mortality' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/los.config',
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@@ -166,6 +167,10 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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if not os.path.exists(path_bench+'/model/data_generation_icu_modify.py'):
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file_path, head = urlretrieve(_DATA_GEN, "data_generation_icu_modify.py")
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shutil.move(file_path, path_bench+'/model')
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if not os.path.exists(path_bench+'/cohort.py'):
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file_path, head = urlretrieve(_COHORT, "cohort.py")
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_CITATION = "https://proceedings.mlr.press/v193/gupta22a.html"
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_URL = "https://github.com/healthylaife/MIMIC-IV-Data-Pipeline"
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_DATA_GEN = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/data_generation_icu_modify.py'
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+
_DAY_INT= 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/day_intervals_cohort_v22.py'
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_COHORT = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/cohort.py'
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_CONFIG_URLS = {'los' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/los.config',
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'mortality' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/los.config',
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if not os.path.exists(path_bench+'/model/data_generation_icu_modify.py'):
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file_path, head = urlretrieve(_DATA_GEN, "data_generation_icu_modify.py")
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shutil.move(file_path, path_bench+'/model')
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if not os.path.exists(path_bench+'/preprocessing/day_intervals_preproc/day_intervals_cohort_v22.py'):
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file_path, head = urlretrieve(_DAY_INT, "day_intervals_cohort_v22.py")
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shutil.move(file_path, path_bench+'/preprocessing/day_intervals_preproc')
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if not os.path.exists(path_bench+'/cohort.py'):
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file_path, head = urlretrieve(_COHORT, "cohort.py")
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