thbndi commited on
Commit
87469a0
·
1 Parent(s): 64afb86

Update Mimic4Dataset.py

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Files changed (1) hide show
  1. Mimic4Dataset.py +3 -2
Mimic4Dataset.py CHANGED
@@ -145,14 +145,14 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  path_bench = repodir+'/MIMIC-IV-Data-Pipeline-main'
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  subprocess.run(["git", "clone", repo_url, path_bench])
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  os.chdir(path_bench)
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-
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  #move data to mimic-iv folder
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  if not os.path.exists(path_bench+'/mimic-iv'):
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  os.makedirs(path_bench+'/mimic-iv')
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  version = self.mimic_path.split('/')[-1]
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  shutil.move(self.mimic_path, path_bench+'/mimic-iv/'+version)
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  self.mimic_path = path_bench+'/mimic-iv/'+version
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-
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  #download config file if not custom
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  if self.config_path[0:4] == 'http':
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  c = self.config_path.split('/')[-1]
@@ -188,6 +188,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  os.system(script)
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  root = path_bench.replace('/MIMIC-IV-Data-Pipeline-main',"")
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  os.chdir(root)
 
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  return [
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  datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
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  ]
 
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  path_bench = repodir+'/MIMIC-IV-Data-Pipeline-main'
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  subprocess.run(["git", "clone", repo_url, path_bench])
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  os.chdir(path_bench)
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+ print(os.getcwd())
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  #move data to mimic-iv folder
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  if not os.path.exists(path_bench+'/mimic-iv'):
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  os.makedirs(path_bench+'/mimic-iv')
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  version = self.mimic_path.split('/')[-1]
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  shutil.move(self.mimic_path, path_bench+'/mimic-iv/'+version)
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  self.mimic_path = path_bench+'/mimic-iv/'+version
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+
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  #download config file if not custom
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  if self.config_path[0:4] == 'http':
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  c = self.config_path.split('/')[-1]
 
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  os.system(script)
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  root = path_bench.replace('/MIMIC-IV-Data-Pipeline-main',"")
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  os.chdir(root)
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+ print(os.getcwd())
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  return [
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  datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
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  ]