Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -9,11 +9,13 @@ import subprocess
 import shutil
 from urllib.request import urlretrieve
 
+
 _DESCRIPTION = """\
 Dataset for mimic4 data, by default for the Mortality task.
-Available tasks are: Mortality, Length of Stay, Readmission, Phenotype.
+Available tasks are: Mortality, Length of Stay, Readmission, Phenotype, Mortality Custom, Length of Stay Custom, Readmission Custom, Phenotype Custom.
 The data is extracted from the mimic4 database using this pipeline: 'https://github.com/healthylaife/MIMIC-IV-Data-Pipeline/tree/main'
 mimic path should have this form : "path/to/mimic4data/from/username/mimiciv/2.2"
+If you choose a Custom task provide a configuration file for the Time series.
 """
 
 _HOMEPAGE = "https://huggingface.co/datasets/thbndi/Mimic4Dataset"
@@ -68,6 +70,26 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
             version=VERSION,
             description="Dataset for mimic4 Mortality task"
         ),
+        Mimic4DatasetConfig(
+            name="Phenotype Custom",
+            version=VERSION,
+            description="Dataset for mimic4 Custom Phenotype task"
+        ),
+        Mimic4DatasetConfig(
+            name="Readmission Custom",
+            version=VERSION,
+            description="Dataset for mimic4 Custom Readmission task"
+        ),
+        Mimic4DatasetConfig(
+            name="Length of Stay Custom",
+            version=VERSION,
+            description="Dataset for mimic4 Custom Length of Stay task"
+        ),
+        Mimic4DatasetConfig(
+            name="Mortality Custom",
+            version=VERSION,
+            description="Dataset for mimic4 Custom Mortality task"
+        ),
     ]
 
     DEFAULT_CONFIG_NAME = "Mortality"
@@ -132,10 +154,12 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         )
 
     def _split_generators(self, dl_manager: datasets.DownloadManager()):
-        if self.config.name == 'Phenotype' and self.config_path is None : self.config_path = _CONFIG_URLS['phenotype'] 
-        if self.config.name == 'Readmission' and self.config_path is None : self.config_path = _CONFIG_URLS['readmission'] 
-        if self.config.name == 'Length of Stay' and self.config_path is None : self.config_path = _CONFIG_URLS['los'] 
-        if self.config.name == 'Mortality' and self.config_path is None : self.config_path = _CONFIG_URLS['mortality']
+        if self.config.name == 'Phenotype' : self.config_path = _CONFIG_URLS['phenotype'] 
+        if self.config.name == 'Readmission' : self.config_path = _CONFIG_URLS['readmission'] 
+        if self.config.name == 'Length of Stay' : self.config_path = _CONFIG_URLS['los'] 
+        if self.config.name == 'Mortality' : self.config_path = _CONFIG_URLS['mortality']
+        if self.config.name in ['Phenotype Custom','Readmission Custom','Length of Stay Custom','Mortality Custom'] and self.config.name==None:
+            raise ValueError('Please select a config file')
         
         version = self.mimic_path.split('/')[-1]
         m = self.mimic_path.split('/')[-2]