--- license: apache-2.0 dataset_info: features: - name: input_ids sequence: int16 - name: coords sequence: sequence: float32 - name: forces sequence: sequence: float32 - name: formation_energy dtype: float32 - name: total_energy dtype: float32 - name: has_formation_energy dtype: bool - name: length dtype: int64 splits: - name: train num_bytes: 43353603080 num_examples: 15000000 download_size: 44763791790 dataset_size: 43353603080 configs: - config_name: default data_files: - split: train path: data/train-* --- ## Dataset Description This dataset contains a collection of 3D atomistic datasets with force and energy labels gathered from a series of sources: - [Open Catalyst Project](https://github.com/FAIR-Chem/fairchem) - OC20, OC22, ODAC23 - [Materials Project Trajectory Dataset (MPtrj)](https://figshare.com/articles/dataset/Materials_Project_Trjectory_MPtrj_Dataset/23713842) - [SPICE 1.1.4](https://www.nature.com/articles/s41597-022-01882-6) ## Dataset Structure ### Data Instances For each instance, there is set of atomic numbers (`input_ids`), 3-D coordinates (`coords`), a set of forces per atom (`forces`), the total and formation energy per system (`total_energy`/`formation_energy`) and a boolean `has_formation_energy` that signifies whether the dataset has a valid formation energy. ``` {'input_ids': [26, 28, 28, 28], 'coords': [[0.0, 0.0, 0.0], [0.0, 0.0, 3.5395920276641846], [0.0, 1.7669789791107178, 1.7697960138320923], [1.7669789791107178, 0.0, 1.7697960138320923]], 'forces': [[-1.999999987845058e-08, 2.999999892949745e-08, -0.0], [-5.99999978589949e-08, 5.99999978589949e-08, 9.99999993922529e-09], [-0.0014535699738189578, 0.0014535400550812483, 9.99999993922529e-09], [0.001453649951145053, -0.0014536300441250205, -2.999999892949745e-08]], 'formation_energy': 0.6030612587928772, 'total_energy': -25.20570182800293, 'has_formation_energy': True} ``` The numbers of atoms within each sample for each dataset varies but the number of samples for each dataset is balanced. `MPtrj` and `SPICE` are upsampled 2x and 3x respectively to ensure a balanced dataset distribution. The datasets are interleaved until we run out of samples where there are 3,160,790 systems from each dataset (2x MPtrj runs out of samples first). ### Citation Information ``` @article{ocp_dataset, author = {Chanussot*, Lowik and Das*, Abhishek and Goyal*, Siddharth and Lavril*, Thibaut and Shuaibi*, Muhammed and Riviere, Morgane and Tran, Kevin and Heras-Domingo, Javier and Ho, Caleb and Hu, Weihua and Palizhati, Aini and Sriram, Anuroop and Wood, Brandon and Yoon, Junwoong and Parikh, Devi and Zitnick, C. Lawrence and Ulissi, Zachary}, title = {Open Catalyst 2020 (OC20) Dataset and Community Challenges}, journal = {ACS Catalysis}, year = {2021}, doi = {10.1021/acscatal.0c04525}, } ``` ``` @article{oc22_dataset, author = {Tran*, Richard and Lan*, Janice and Shuaibi*, Muhammed and Wood*, Brandon and Goyal*, Siddharth and Das, Abhishek and Heras-Domingo, Javier and Kolluru, Adeesh and Rizvi, Ammar and Shoghi, Nima and Sriram, Anuroop and Ulissi, Zachary and Zitnick, C. Lawrence}, title = {The Open Catalyst 2022 (OC22) dataset and challenges for oxide electrocatalysts}, journal = {ACS Catalysis}, year={2023}, } ``` ``` @article{odac23_dataset, author = {Anuroop Sriram and Sihoon Choi and Xiaohan Yu and Logan M. Brabson and Abhishek Das and Zachary Ulissi and Matt Uyttendaele and Andrew J. Medford and David S. Sholl}, title = {The Open DAC 2023 Dataset and Challenges for Sorbent Discovery in Direct Air Capture}, year = {2023}, journal={arXiv preprint arXiv:2311.00341}, } ``` ``` @article{deng_2023_chgnet, author={Deng, Bowen and Zhong, Peichen and Jun, KyuJung and Riebesell, Janosh and Han, Kevin and Bartel, Christopher J. and Ceder, Gerbrand}, title={CHGNet as a pretrained universal neural network potential for charge-informed atomistic modelling}, journal={Nature Machine Intelligence}, year={2023}, DOI={10.1038/s42256-023-00716-3}, pages={1–11} } ``` ``` @article{eastman2023spice, title={Spice, a dataset of drug-like molecules and peptides for training machine learning potentials}, author={Eastman, Peter and Behara, Pavan Kumar and Dotson, David L and Galvelis, Raimondas and Herr, John E and Horton, Josh T and Mao, Yuezhi and Chodera, John D and Pritchard, Benjamin P and Wang, Yuanqing and others}, journal={Scientific Data}, volume={10}, number={1}, pages={11}, year={2023}, publisher={Nature Publishing Group UK London} } ```