ziq commited on
Commit
3c97482
·
1 Parent(s): b2dd861

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +31 -1
README.md CHANGED
@@ -82,7 +82,7 @@ mask = np.array(mask)
82
  ```
83
 
84
 
85
- ### Plot Mask
86
 
87
  ```python
88
  from matplotlib.colors import ListedColormap, BoundaryNorm
@@ -111,15 +111,45 @@ def plot(image, mask, cmap='gray'):
111
  plt.show()
112
  ```
113
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
114
  ```python
115
  plot(image, mask)
116
  ```
117
 
118
  ![gray cmap](https://huggingface.co/datasets/ziq/RSNA-ATD2023/resolve/main/assets/grayscale.png)
119
 
 
 
 
120
  ```python
121
  plot_mask(mask)
122
  ```
123
 
124
  ![custom cmap](https://huggingface.co/datasets/ziq/RSNA-ATD2023/resolve/main/assets/mask.png)
125
 
 
 
 
 
 
 
 
 
 
 
82
  ```
83
 
84
 
85
+ ### Write Plotting Function
86
 
87
  ```python
88
  from matplotlib.colors import ListedColormap, BoundaryNorm
 
111
  plt.show()
112
  ```
113
 
114
+ ### Plot
115
+
116
+ ```python
117
+ fig = plt.figure(figsize=(16,16))
118
+ ax1 = fig.add_subplot(131)
119
+ plt.axis('off')
120
+ ax1.imshow(image, cmap='gray')
121
+ ax2 = fig.add_subplot(132)
122
+ plt.axis('off')
123
+ ax2.imshow(mask, cmap='gray')
124
+ ax3 = fig.add_subplot(133)
125
+ ax3.imshow(image*np.where(mask>0,1,0), cmap='gray')
126
+ plt.axis('off')
127
+ plt.show()
128
+ ```
129
+
130
+ ![raw cmap](https://huggingface.co/datasets/ziq/RSNA-ATD2023/resolve/main/assets/raw.png)
131
+
132
  ```python
133
  plot(image, mask)
134
  ```
135
 
136
  ![gray cmap](https://huggingface.co/datasets/ziq/RSNA-ATD2023/resolve/main/assets/grayscale.png)
137
 
138
+
139
+ ### Custom Color
140
+
141
  ```python
142
  plot_mask(mask)
143
  ```
144
 
145
  ![custom cmap](https://huggingface.co/datasets/ziq/RSNA-ATD2023/resolve/main/assets/mask.png)
146
 
147
+ ### Plot only one class (e.g. liver)
148
+
149
+ ```python
150
+ liver, spleen, right_kidney, left_kidney, bowel = [(mask == i,1,0)[0] * i for i in range(1, len(labels))]
151
+ plot_mask(liver)
152
+ ```
153
+
154
+ ![liver](https://huggingface.co/datasets/ziq/RSNA-ATD2023/resolve/main/assets/liver.png)
155
+