ziq commited on
Commit
2735d7b
·
1 Parent(s): b324d54

Update rsna-atd.py

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  1. rsna-atd.py +25 -21
rsna-atd.py CHANGED
@@ -33,27 +33,27 @@ class RSNAATD(datasets.GeneratorBasedBuilder):
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  description=_DESCRIPTION,
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  features=datasets.Features(
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  {
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- # "test": datasets.Value("string"),
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- "patient_id": datasets.Value("int64"),
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- "series_id": datasets.Value("int64"),
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- "image": datasets.Array3D(shape=(None, 512, 512), dtype="uint8"),
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- "mask": datasets.Array3D(shape=(None, 512, 512), dtype="uint8"),
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- "aortic_hu": datasets.Value("float64"),
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- "incomplete_organ": datasets.Value("int64"),
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- "bowel_healthy": datasets.Value("int64"),
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- "bowel_injury": datasets.Value("int64"),
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- "extravasation_healthy": datasets.Value("int64"),
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- "extravasation_injury": datasets.Value("int64"),
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- "kidney_healthy": datasets.Value("int64"),
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- "kidney_low": datasets.Value("int64"),
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- "kidney_high": datasets.Value("int64"),
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- "liver_healthy": datasets.Value("int64"),
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- "liver_low": datasets.Value("int64"),
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- "liver_high": datasets.Value("int64"),
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- "spleen_healthy": datasets.Value("int64"),
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- "spleen_low": datasets.Value("int64"),
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- "spleen_high": datasets.Value("int64"),
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- "any_injury": datasets.Value("int64"),
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  }
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  ),
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  supervised_keys=None,
@@ -95,6 +95,10 @@ class RSNAATD(datasets.GeneratorBasedBuilder):
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  # return
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  for idx, (image_path, mask_path) in enumerate(zip(sorted(images), sorted(masks))):
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  data = df.loc[df["path"] == Path(image_path).name].to_numpy()
 
 
 
 
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  image, mask = [hkl.load(image_path)], [hkl.load(mask_path)]
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  (
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  patient_id,
 
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  description=_DESCRIPTION,
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  features=datasets.Features(
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  {
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+ "test": datasets.Value("string"),
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+ # "patient_id": datasets.Value("int64"),
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+ # "series_id": datasets.Value("int64"),
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+ # "image": datasets.Array3D(shape=(None, 512, 512), dtype="uint8"),
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+ # "mask": datasets.Array3D(shape=(None, 512, 512), dtype="uint8"),
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+ # "aortic_hu": datasets.Value("float64"),
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+ # "incomplete_organ": datasets.Value("int64"),
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+ # "bowel_healthy": datasets.Value("int64"),
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+ # "bowel_injury": datasets.Value("int64"),
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+ # "extravasation_healthy": datasets.Value("int64"),
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+ # "extravasation_injury": datasets.Value("int64"),
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+ # "kidney_healthy": datasets.Value("int64"),
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+ # "kidney_low": datasets.Value("int64"),
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+ # "kidney_high": datasets.Value("int64"),
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+ # "liver_healthy": datasets.Value("int64"),
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+ # "liver_low": datasets.Value("int64"),
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+ # "liver_high": datasets.Value("int64"),
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+ # "spleen_healthy": datasets.Value("int64"),
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+ # "spleen_low": datasets.Value("int64"),
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+ # "spleen_high": datasets.Value("int64"),
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+ # "any_injury": datasets.Value("int64"),
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  }
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  ),
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  supervised_keys=None,
 
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  # return
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  for idx, (image_path, mask_path) in enumerate(zip(sorted(images), sorted(masks))):
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  data = df.loc[df["path"] == Path(image_path).name].to_numpy()
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+ yield 0, {
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+ "test": f"{data}"
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+ }
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+ return
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  image, mask = [hkl.load(image_path)], [hkl.load(mask_path)]
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  (
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  patient_id,