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"""Long Range Arena datasets"""
import io
import logging
import os
import pickle
from pathlib import Path
import torch
from torch import nn
import torch.nn.functional as F
import torchtext
import torchvision
from einops.layers.torch import Rearrange, Reduce
from PIL import Image # Only used for Pathfinder
from datasets import DatasetDict, Value, load_dataset, load_from_disk
from .base import default_data_path, SequenceDataset, ImageResolutionSequenceDataset
class IMDB(SequenceDataset):
_name_ = "imdb"
d_output = 2
l_output = 0
@property
def init_defaults(self):
return {
"l_max": 4096,
"level": "char",
"min_freq": 15,
"seed": 42,
"val_split": 0.0,
"append_bos": False,
"append_eos": True,
# 'max_vocab': 135,
"n_workers": 4, # Only used for tokenizing dataset before caching
}
@property
def n_tokens(self):
return len(self.vocab)
def prepare_data(self):
if self.cache_dir is None: # Just download the dataset
load_dataset(self._name_, cache_dir=self.data_dir)
else: # Process the dataset and save it
self.process_dataset()
def setup(self, stage=None):
"""If cache_dir is not None, we'll cache the processed dataset there."""
# # NOTE - AW - we manually set these elsewhere.
# self.data_dir = self.data_dir or default_data_path / self._name_
# self.cache_dir = self.data_dir / "cache"
assert self.level in [
"word",
"char",
], f"level {self.level} not supported"
if stage == "test" and hasattr(self, "dataset_test"):
return
dataset, self.tokenizer, self.vocab = self.process_dataset()
print(
f"IMDB {self.level} level | min_freq {self.min_freq} | vocab size {len(self.vocab)}"
)
dataset.set_format(type="torch", columns=["input_ids", "label"])
# Create all splits
dataset_train, self.dataset_test = dataset["train"], dataset["test"]
if self.val_split == 0.0:
# Use test set as val set, as done in the LRA paper
self.dataset_train, self.dataset_val = dataset_train, None
else:
train_val = dataset_train.train_test_split(
test_size=self.val_split, seed=self.seed
)
self.dataset_train, self.dataset_val = (
train_val["train"],
train_val["test"],
)
def _collate_fn(self, batch):
xs, ys = zip(*[(data["input_ids"], data["label"]) for data in batch])
lengths = torch.tensor([len(x) for x in xs])
xs = nn.utils.rnn.pad_sequence(
xs, padding_value=self.vocab["<pad>"], batch_first=True
)
ys = torch.tensor(ys)
return xs, ys, {"lengths": lengths}
# self._collate_fn = collate_batch
def process_dataset(self):
cache_dir = (
None if self.cache_dir is None else self.cache_dir / self._cache_dir_name
)
if cache_dir is not None:
if cache_dir.is_dir():
return self._load_from_cache(cache_dir)
print(f"self._name_: {self._name_}")
print(f"self.data_dir: {self.data_dir}")
# dataset = load_dataset(self._name_, cache_dir=self.data_dir)
dataset = load_from_disk('essays')
print(type(dataset))
dataset = DatasetDict(train=dataset["train"], test=dataset["test"])
if self.level == "word":
tokenizer = torchtext.data.utils.get_tokenizer(
"spacy", language="en_core_web_sm"
)
else: # self.level == 'char'
tokenizer = list # Just convert a string to a list of chars
# Account for <bos> and <eos> tokens
l_max = self.l_max - int(self.append_bos) - int(self.append_eos)
tokenize = lambda example: {"tokens": tokenizer(example["text"])[:l_max]}
dataset = dataset.map(
tokenize,
remove_columns=["text"],
keep_in_memory=True,
load_from_cache_file=False,
num_proc=max(self.n_workers, 1),
)
vocab = torchtext.vocab.build_vocab_from_iterator(
dataset["train"]["tokens"],
min_freq=self.min_freq,
specials=(
["<pad>", "<unk>"]
+ (["<bos>"] if self.append_bos else [])
+ (["<eos>"] if self.append_eos else [])
),
)
vocab.set_default_index(vocab["<unk>"])
numericalize = lambda example: {
"input_ids": vocab(
(["<bos>"] if self.append_bos else [])
+ example["tokens"]
+ (["<eos>"] if self.append_eos else [])
)
}
dataset = dataset.map(
numericalize,
remove_columns=["tokens"],
keep_in_memory=True,
load_from_cache_file=False,
num_proc=max(self.n_workers, 1),
)
if cache_dir is not None:
self._save_to_cache(dataset, tokenizer, vocab, cache_dir)
return dataset, tokenizer, vocab
def _save_to_cache(self, dataset, tokenizer, vocab, cache_dir):
cache_dir = self.cache_dir / self._cache_dir_name
logger = logging.getLogger(__name__)
logger.info(f"Saving to cache at {str(cache_dir)}")
dataset.save_to_disk(str(cache_dir))
with open(cache_dir / "tokenizer.pkl", "wb") as f:
pickle.dump(tokenizer, f)
with open(cache_dir / "vocab.pkl", "wb") as f:
pickle.dump(vocab, f)
def _load_from_cache(self, cache_dir):
assert cache_dir.is_dir()
logger = logging.getLogger(__name__)
logger.info(f"Load from cache at {str(cache_dir)}")
dataset = DatasetDict.load_from_disk(str(cache_dir))
with open(cache_dir / "tokenizer.pkl", "rb") as f:
tokenizer = pickle.load(f)
with open(cache_dir / "vocab.pkl", "rb") as f:
vocab = pickle.load(f)
return dataset, tokenizer, vocab
@property
def _cache_dir_name(self):
return f"l_max-{self.l_max}-level-{self.level}-min_freq-{self.min_freq}-append_bos-{self.append_bos}-append_eos-{self.append_eos}"
class TabularDataset(torch.utils.data.Dataset):
def __init__(
self,
path,
format,
col_idx=None,
skip_header=False,
csv_reader_params=None,
):
"""
col_idx: the indices of the columns.
"""
if csv_reader_params is None:
csv_reader_params = {}
format = format.lower()
assert format in ["tsv", "csv"]
with io.open(os.path.expanduser(path), encoding="utf8") as f:
if format == "csv":
reader = torchtext.utils.unicode_csv_reader(f, **csv_reader_params)
elif format == "tsv":
reader = torchtext.utils.unicode_csv_reader(
f, delimiter="\t", **csv_reader_params
)
else:
reader = f
if skip_header:
next(reader)
self._data = [
line if col_idx is None else [line[c] for c in col_idx]
for line in reader
]
def __len__(self):
return len(self._data)
def __getitem__(self, idx):
return self._data[idx]
# LRA tokenizer renames ']' to 'X' and delete parentheses as their tokenizer removes
# non-alphanumeric characters.
# https://github.com/google-research/long-range-arena/blob/264227cbf9591e39dd596d2dc935297a2070bdfe/lra_benchmarks/listops/input_pipeline.py#L46
def listops_tokenizer(s):
return s.translate({ord("]"): ord("X"), ord("("): None, ord(")"): None}).split()
class ListOps(SequenceDataset):
_name_ = "listops"
d_output = 10
l_output = 0
@property
def init_defaults(self):
return {
"l_max": 2048,
"append_bos": False,
"append_eos": True,
# 'max_vocab': 20, # Actual size 18
"n_workers": 4, # Only used for tokenizing dataset
}
@property
def n_tokens(self):
return len(self.vocab)
@property
def _cache_dir_name(self):
return f"l_max-{self.l_max}-append_bos-{self.append_bos}-append_eos-{self.append_eos}"
def init(self):
if self.data_dir is None:
self.data_dir = default_data_path / self._name_
self.cache_dir = self.data_dir / self._cache_dir_name
def prepare_data(self):
if self.cache_dir is None:
for split in ["train", "val", "test"]:
split_path = self.data_dir / f"basic_{split}.tsv"
if not split_path.is_file():
raise FileNotFoundError(
f"""
File {str(split_path)} not found.
To get the dataset, download lra_release.gz from
https://github.com/google-research/long-range-arena,
then unzip it with tar -xvf lra_release.gz.
Then point data_dir to the listops-1000 directory.
"""
)
else: # Process the dataset and save it
self.process_dataset()
def setup(self, stage=None):
if stage == "test" and hasattr(self, "dataset_test"):
return
dataset, self.tokenizer, self.vocab = self.process_dataset()
self.vocab_size = len(self.vocab)
dataset.set_format(type="torch", columns=["input_ids", "Target"])
self.dataset_train, self.dataset_val, self.dataset_test = (
dataset["train"],
dataset["val"],
dataset["test"],
)
def collate_batch(batch):
xs, ys = zip(*[(data["input_ids"], data["Target"]) for data in batch])
lengths = torch.tensor([len(x) for x in xs])
xs = nn.utils.rnn.pad_sequence(
xs, padding_value=self.vocab["<pad>"], batch_first=True
)
ys = torch.tensor(ys)
return xs, ys, {"lengths": lengths}
self._collate_fn = collate_batch
def process_dataset(self):
cache_dir = (
None if self.cache_dir is None else self.cache_dir / self._cache_dir_name
)
if cache_dir is not None:
if cache_dir.is_dir():
return self._load_from_cache(cache_dir)
dataset = load_dataset(
"csv",
data_files={
"train": str(self.data_dir / "basic_train.tsv"),
"val": str(self.data_dir / "basic_val.tsv"),
"test": str(self.data_dir / "basic_test.tsv"),
},
delimiter="\t",
keep_in_memory=True,
)
tokenizer = listops_tokenizer
# Account for <bos> and <eos> tokens
l_max = self.l_max - int(self.append_bos) - int(self.append_eos)
tokenize = lambda example: {"tokens": tokenizer(example["Source"])[:l_max]}
dataset = dataset.map(
tokenize,
remove_columns=["Source"],
keep_in_memory=True,
load_from_cache_file=False,
num_proc=max(self.n_workers, 1),
)
vocab = torchtext.vocab.build_vocab_from_iterator(
dataset["train"]["tokens"],
specials=(
["<pad>", "<unk>"]
+ (["<bos>"] if self.append_bos else [])
+ (["<eos>"] if self.append_eos else [])
),
)
vocab.set_default_index(vocab["<unk>"])
numericalize = lambda example: {
"input_ids": vocab(
(["<bos>"] if self.append_bos else [])
+ example["tokens"]
+ (["<eos>"] if self.append_eos else [])
)
}
dataset = dataset.map(
numericalize,
remove_columns=["tokens"],
keep_in_memory=True,
load_from_cache_file=False,
num_proc=max(self.n_workers, 1),
)
if cache_dir is not None:
self._save_to_cache(dataset, tokenizer, vocab, cache_dir)
return dataset, tokenizer, vocab
def _save_to_cache(self, dataset, tokenizer, vocab, cache_dir):
cache_dir = self.cache_dir / self._cache_dir_name
logger = logging.getLogger(__name__)
logger.info(f"Saving to cache at {str(cache_dir)}")
dataset.save_to_disk(str(cache_dir))
with open(cache_dir / "tokenizer.pkl", "wb") as f:
pickle.dump(tokenizer, f)
with open(cache_dir / "vocab.pkl", "wb") as f:
pickle.dump(vocab, f)
def _load_from_cache(self, cache_dir):
assert cache_dir.is_dir()
logger = logging.getLogger(__name__)
logger.info(f"Load from cache at {str(cache_dir)}")
dataset = DatasetDict.load_from_disk(str(cache_dir))
with open(cache_dir / "tokenizer.pkl", "rb") as f:
tokenizer = pickle.load(f)
with open(cache_dir / "vocab.pkl", "rb") as f:
vocab = pickle.load(f)
return dataset, tokenizer, vocab
class PathFinderDataset(torch.utils.data.Dataset):
"""Path Finder dataset."""
# There's an empty file in the dataset
blacklist = {"pathfinder32/curv_baseline/imgs/0/sample_172.png"}
def __init__(self, data_dir, transform=None):
"""
Args:
data_dir (string): Directory with all the images.
transform (callable, optional): Optional transform to be applied
on a sample.
"""
self.data_dir = Path(data_dir).expanduser()
assert self.data_dir.is_dir(), f"data_dir {str(self.data_dir)} does not exist"
self.transform = transform
samples = []
# for diff_level in ['curv_baseline', 'curv_contour_length_9', 'curv_contour_length_14']:
for diff_level in ["curv_contour_length_14"]:
path_list = sorted(
list((self.data_dir / diff_level / "metadata").glob("*.npy")),
key=lambda path: int(path.stem),
)
assert path_list, "No metadata found"
for metadata_file in path_list:
with open(metadata_file, "r") as f:
for metadata in f.read().splitlines():
metadata = metadata.split()
image_path = Path(diff_level) / metadata[0] / metadata[1]
if (
str(Path(self.data_dir.stem) / image_path)
not in self.blacklist
):
label = int(metadata[3])
samples.append((image_path, label))
self.samples = samples
def __len__(self):
return len(self.samples)
def __getitem__(self, idx):
path, target = self.samples[idx]
# https://github.com/pytorch/vision/blob/9b29f3f22783112406d9c1a6db47165a297c3942/torchvision/datasets/folder.py#L247
with open(self.data_dir / path, "rb") as f:
sample = Image.open(f).convert("L") # Open in grayscale
if self.transform is not None:
sample = self.transform(sample)
return sample, target
class PathFinder(ImageResolutionSequenceDataset):
_name_ = "pathfinder"
d_input = 1
d_output = 2
l_output = 0
@property
def n_tokens(self):
if self.tokenize:
return 256
@property
def init_defaults(self):
return {
"resolution": 32,
"sequential": True,
"tokenize": False,
"pool": 1,
"val_split": 0.1,
"test_split": 0.1,
"seed": 42, # Controls the train/val/test split
}
def default_transforms(self):
transform_list = [torchvision.transforms.ToTensor()]
if self.pool > 1:
transform_list.append(
Reduce(
"1 (h h2) (w w2) -> 1 h w",
"mean",
h2=self.pool,
w2=self.pool,
)
)
if self.tokenize:
transform_list.append(
torchvision.transforms.Lambda(lambda x: (x * 255).long())
)
else:
transform_list.append(torchvision.transforms.Normalize(mean=0.5, std=0.5))
if self.sequential:
# If tokenize, it makes more sense to get rid of the channel dimension
transform_list.append(
Rearrange("1 h w -> (h w)")
if self.tokenize
else Rearrange("1 h w -> (h w) 1")
)
else:
transform_list.append(Rearrange("1 h w -> h w 1"))
return torchvision.transforms.Compose(transform_list)
def prepare_data(self):
if not self.data_dir.is_dir():
raise FileNotFoundError(
f"""
Directory {str(self.data_dir)} not found.
To get the dataset, download lra_release.gz from
https://github.com/google-research/long-range-arena,
then unzip it with tar -xvf lra_release.gz.
Then point data_dir to the pathfinderX directory, where X is either 32, 64, 128, or 256.
"""
)
def setup(self, stage=None):
if self.data_dir is None:
self.data_dir = (
default_data_path / self._name_ / f"pathfinder{self.resolution}"
)
if self.cache_dir is not None:
if Path(self.cache_dir / (self._cache_dir_name + '.pt')).exists():
with open(self.cache_dir / (self._cache_dir_name + '.pt'), 'rb') as f:
dset = torch.load(f)
self.dataset_train = dset['train']
self.dataset_val = dset['val']
self.dataset_test = dset['test']
return None
if stage == "test" and hasattr(self, "dataset_test"):
return
# [2021-08-18] TD: I ran into RuntimeError: Too many open files.
# https://github.com/pytorch/pytorch/issues/11201
torch.multiprocessing.set_sharing_strategy("file_system")
dataset = PathFinderDataset(self.data_dir, transform=self.default_transforms())
len_dataset = len(dataset)
val_len = int(self.val_split * len_dataset)
test_len = int(self.test_split * len_dataset)
train_len = len_dataset - val_len - test_len
(
self.dataset_train,
self.dataset_val,
self.dataset_test,
) = torch.utils.data.random_split(
dataset,
[train_len, val_len, test_len],
generator=torch.Generator().manual_seed(self.seed),
)
# AW - Now we need to iterate over each of these datasets and store them in a proper cache.
def _compile_convert(dset, tag):
"""
:param dset:
:param tag:
:return:
"""
loader = torch.utils.data.DataLoader(dataset=dset, batch_size=len(dset), shuffle=False, drop_last=False)
inp, out = next(iter(loader))
dset_compiled = torch.utils.data.TensorDataset(inp, out)
return dset_compiled
os.makedirs(self.cache_dir, exist_ok=True)
self.dataset_train = _compile_convert(self.dataset_train, tag='train')
self.dataset_val = _compile_convert(self.dataset_val, tag='val')
self.dataset_test = _compile_convert(self.dataset_test, tag='test')
# Cache.
cache_path = self.cache_dir / (self._cache_dir_name + '.pt')
logger = logging.getLogger(__name__)
logger.info(f"Saving to cache at {str(cache_path)}")
with open(cache_path, 'wb') as f:
torch.save({'train': self.dataset_train,
'val': self.dataset_val,
'test': self.dataset_test},
f)
@property
def _cache_dir_name(self):
return f"pathfinder-resolution-{self.resolution}"
class AAN(SequenceDataset):
_name_ = "aan"
d_output = 2 # Use accuracy instead of binary_accuracy
l_output = 0
@property
def n_tokens(self):
return len(self.vocab)
@property
def init_defaults(self):
return {
"l_max": 4000,
# 'max_vocab': 100, # Full size 98
"append_bos": False,
"append_eos": True,
"n_workers": 4, # For tokenizing only
}
@property
def _cache_dir_name(self):
return f"l_max-{self.l_max}-append_bos-{self.append_bos}-append_eos-{self.append_eos}"
def init(self):
if self.data_dir is None:
self.data_dir = default_data_path / self._name_
self.cache_dir = self.data_dir / self._cache_dir_name
def prepare_data(self):
if self.cache_dir is None:
for split in ["train", "eval", "test"]:
split_path = self.data_dir / f"new_aan_pairs.{split}.tsv"
if not split_path.is_file():
raise FileNotFoundError(
f"""
File {str(split_path)} not found.
To get the dataset, download lra_release.gz from
https://github.com/google-research/long-range-arena,
then unzip it with tar -xvf lra_release.gz.
Then point data_dir to the tsv_data directory.
"""
)
else: # Process the dataset and save it
self.process_dataset()
def setup(self, stage=None):
if stage == "test" and hasattr(self, "dataset_test"):
return
# [2021-08-18] TD: I ran into RuntimeError: Too many open files.
# https://github.com/pytorch/pytorch/issues/11201
torch.multiprocessing.set_sharing_strategy("file_system")
dataset, self.tokenizer, self.vocab = self.process_dataset()
# self.vocab_size = len(self.vocab)
print("AAN vocab size:", len(self.vocab))
dataset.set_format(type="torch", columns=["input_ids1", "input_ids2", "label"])
self.dataset_train, self.dataset_val, self.dataset_test = (
dataset["train"],
dataset["val"],
dataset["test"],
)
def collate_batch(batch):
xs1, xs2, ys = zip(
*[
(data["input_ids1"], data["input_ids2"], data["label"])
for data in batch
]
)
lengths1 = torch.tensor([len(x) for x in xs1])
lengths2 = torch.tensor([len(x) for x in xs2])
xs1 = nn.utils.rnn.pad_sequence(
xs1, padding_value=self.vocab["<pad>"], batch_first=True
)
xs2 = nn.utils.rnn.pad_sequence(
xs2, padding_value=self.vocab["<pad>"], batch_first=True
)
# Pad both to same length
# Shape (batch, length)
L = max(xs1.size(1), xs2.size(1))
xs1 = F.pad(xs1, (0, L-xs1.size(1)), value=self.vocab["<pad>"])
xs2 = F.pad(xs2, (0, L-xs2.size(1)), value=self.vocab["<pad>"])
ys = torch.tensor(ys)
# return xs1, xs2, ys, lengths1, lengths2
# Concatenate two batches
xs = torch.cat([xs1, xs2], dim=0)
lengths = torch.cat([lengths1, lengths2], dim=0)
return xs, ys, {"lengths": lengths}
self._collate_fn = collate_batch
def process_dataset(self):
cache_dir = (
None if self.cache_dir is None else self.cache_dir / self._cache_dir_name
)
if cache_dir is not None:
if cache_dir.is_dir():
return self._load_from_cache(cache_dir)
dataset = load_dataset(
"csv",
data_files={
"train": str(self.data_dir / "new_aan_pairs.train.tsv"),
"val": str(self.data_dir / "new_aan_pairs.eval.tsv"),
"test": str(self.data_dir / "new_aan_pairs.test.tsv"),
},
delimiter="\t",
column_names=["label", "input1_id", "input2_id", "text1", "text2"],
keep_in_memory=True,
) # True)
dataset = dataset.remove_columns(["input1_id", "input2_id"])
new_features = dataset["train"].features.copy()
new_features["label"] = Value("int32")
dataset = dataset.cast(new_features)
tokenizer = list # Just convert a string to a list of chars
# Account for <bos> and <eos> tokens
l_max = self.l_max - int(self.append_bos) - int(self.append_eos)
tokenize = lambda example: {
"tokens1": tokenizer(example["text1"])[:l_max],
"tokens2": tokenizer(example["text2"])[:l_max],
}
dataset = dataset.map(
tokenize,
remove_columns=["text1", "text2"],
keep_in_memory=True,
load_from_cache_file=False,
num_proc=max(self.n_workers, 1),
)
vocab = torchtext.vocab.build_vocab_from_iterator(
dataset["train"]["tokens1"] + dataset["train"]["tokens2"],
specials=(
["<pad>", "<unk>"]
+ (["<bos>"] if self.append_bos else [])
+ (["<eos>"] if self.append_eos else [])
),
)
vocab.set_default_index(vocab["<unk>"])
encode = lambda text: vocab(
(["<bos>"] if self.append_bos else [])
+ text
+ (["<eos>"] if self.append_eos else [])
)
numericalize = lambda example: {
"input_ids1": encode(example["tokens1"]),
"input_ids2": encode(example["tokens2"]),
}
dataset = dataset.map(
numericalize,
remove_columns=["tokens1", "tokens2"],
keep_in_memory=True,
load_from_cache_file=False,
num_proc=max(self.n_workers, 1),
)
if cache_dir is not None:
self._save_to_cache(dataset, tokenizer, vocab, cache_dir)
return dataset, tokenizer, vocab
def _save_to_cache(self, dataset, tokenizer, vocab, cache_dir):
cache_dir = self.cache_dir / self._cache_dir_name
logger = logging.getLogger(__name__)
logger.info(f"Saving to cache at {str(cache_dir)}")
dataset.save_to_disk(str(cache_dir))
with open(cache_dir / "tokenizer.pkl", "wb") as f:
pickle.dump(tokenizer, f)
with open(cache_dir / "vocab.pkl", "wb") as f:
pickle.dump(vocab, f)
def _load_from_cache(self, cache_dir):
assert cache_dir.is_dir()
logger = logging.getLogger(__name__)
logger.info(f"Load from cache at {str(cache_dir)}")
dataset = DatasetDict.load_from_disk(str(cache_dir))
with open(cache_dir / "tokenizer.pkl", "rb") as f:
tokenizer = pickle.load(f)
with open(cache_dir / "vocab.pkl", "rb") as f:
vocab = pickle.load(f)
return dataset, tokenizer, vocab
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