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For now, the model might be ineffective in embedding synthetic drugs, since it is still trained on just natural products. Also, the tokenizer used is still uncustomized one.
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## Testing Generated Embeddings' Clusters
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The plot below
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![image/png](https://cdn-uploads.huggingface.co/production/uploads/667da868d653c0b02d6a2399/c8_5IWjPgbrGY0Z9-ZHop.png)
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For now, the model might be ineffective in embedding synthetic drugs, since it is still trained on just natural products. Also, the tokenizer used is still uncustomized one.
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## Testing Generated Embeddings' Clusters
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The plot below shows how the model's embeddings (at this stage) cluster different classes of compounds, compared to using MACCS fingerprints.
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![image/png](https://cdn-uploads.huggingface.co/production/uploads/667da868d653c0b02d6a2399/c8_5IWjPgbrGY0Z9-ZHop.png)
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