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AIDO.Protein-16B-dms-indels-B1LPA6_ECOSM_Russ_2020_indels

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Ning Sun commited on
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2df10fb
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1 Parent(s): a3e1cb5

initial upload

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Files changed (5) hide show
  1. fold0/config.yaml +9 -1
  2. fold1/config.yaml +9 -1
  3. fold2/config.yaml +9 -1
  4. fold3/config.yaml +9 -1
  5. fold4/config.yaml +9 -1
fold0/config.yaml CHANGED
@@ -154,7 +154,15 @@ model:
154
  config_overwrites: null
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  model_init_args: null
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  max_length: 2048
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- adapter: genbio_finetune.models.MLPMeanPoolAdapter
 
 
 
 
 
 
 
 
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  optimizer:
159
  class_path: torch.optim.AdamW
160
  init_args:
 
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
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+ adapter:
158
+ class_path: genbio_finetune.models.MLPPoolAdapter
159
+ init_args:
160
+ pooling: mean_pooling
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+ hidden_sizes:
162
+ - 128
163
+ bias: true
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+ dropout: 0.1
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+ dropout_in_middle: false
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  optimizer:
167
  class_path: torch.optim.AdamW
168
  init_args:
fold1/config.yaml CHANGED
@@ -154,7 +154,15 @@ model:
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
157
- adapter: genbio_finetune.models.MLPMeanPoolAdapter
 
 
 
 
 
 
 
 
158
  optimizer:
159
  class_path: torch.optim.AdamW
160
  init_args:
 
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
157
+ adapter:
158
+ class_path: genbio_finetune.models.MLPPoolAdapter
159
+ init_args:
160
+ pooling: mean_pooling
161
+ hidden_sizes:
162
+ - 128
163
+ bias: true
164
+ dropout: 0.1
165
+ dropout_in_middle: false
166
  optimizer:
167
  class_path: torch.optim.AdamW
168
  init_args:
fold2/config.yaml CHANGED
@@ -154,7 +154,15 @@ model:
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
157
- adapter: genbio_finetune.models.MLPMeanPoolAdapter
 
 
 
 
 
 
 
 
158
  optimizer:
159
  class_path: torch.optim.AdamW
160
  init_args:
 
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
157
+ adapter:
158
+ class_path: genbio_finetune.models.MLPPoolAdapter
159
+ init_args:
160
+ pooling: mean_pooling
161
+ hidden_sizes:
162
+ - 128
163
+ bias: true
164
+ dropout: 0.1
165
+ dropout_in_middle: false
166
  optimizer:
167
  class_path: torch.optim.AdamW
168
  init_args:
fold3/config.yaml CHANGED
@@ -154,7 +154,15 @@ model:
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
157
- adapter: genbio_finetune.models.MLPMeanPoolAdapter
 
 
 
 
 
 
 
 
158
  optimizer:
159
  class_path: torch.optim.AdamW
160
  init_args:
 
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
157
+ adapter:
158
+ class_path: genbio_finetune.models.MLPPoolAdapter
159
+ init_args:
160
+ pooling: mean_pooling
161
+ hidden_sizes:
162
+ - 128
163
+ bias: true
164
+ dropout: 0.1
165
+ dropout_in_middle: false
166
  optimizer:
167
  class_path: torch.optim.AdamW
168
  init_args:
fold4/config.yaml CHANGED
@@ -154,7 +154,15 @@ model:
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
157
- adapter: genbio_finetune.models.MLPMeanPoolAdapter
 
 
 
 
 
 
 
 
158
  optimizer:
159
  class_path: torch.optim.AdamW
160
  init_args:
 
154
  config_overwrites: null
155
  model_init_args: null
156
  max_length: 2048
157
+ adapter:
158
+ class_path: genbio_finetune.models.MLPPoolAdapter
159
+ init_args:
160
+ pooling: mean_pooling
161
+ hidden_sizes:
162
+ - 128
163
+ bias: true
164
+ dropout: 0.1
165
+ dropout_in_middle: false
166
  optimizer:
167
  class_path: torch.optim.AdamW
168
  init_args: