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PLM-Secondary-Structure-Generation

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  1. README.md +13 -15
  2. pytorch_model.bin +1 -1
  3. training_args.bin +1 -1
README.md CHANGED
@@ -15,8 +15,8 @@ should probably proofread and complete it, then remove this comment. -->
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  This model is a fine-tuned version of [ElnaggarLab/ankh-base](https://huggingface.co/ElnaggarLab/ankh-base) on the None dataset.
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  It achieves the following results on the evaluation set:
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- - Loss: 0.1622
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- - Q3 Accuracy: 0.4790
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  ## Model description
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@@ -35,29 +35,27 @@ More information needed
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  ### Training hyperparameters
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  The following hyperparameters were used during training:
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- - learning_rate: 0.001
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  - train_batch_size: 1
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- - eval_batch_size: 1
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  - seed: 7
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  - distributed_type: multi-GPU
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- - num_devices: 4
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- - gradient_accumulation_steps: 4
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- - total_train_batch_size: 16
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- - total_eval_batch_size: 4
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  - optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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  - lr_scheduler_type: linear
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- - lr_scheduler_warmup_steps: 1000
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- - num_epochs: 5
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  ### Training results
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  | Training Loss | Epoch | Step | Validation Loss | Q3 Accuracy |
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  |:-------------:|:-----:|:----:|:---------------:|:-----------:|
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- | 0.3368 | 1.0 | 635 | 0.1976 | 0.4790 |
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- | 0.1696 | 2.0 | 1271 | 0.1658 | 0.4790 |
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- | 0.1631 | 3.0 | 1907 | 0.1645 | 0.4790 |
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- | 0.1647 | 4.0 | 2543 | 0.1632 | 0.4790 |
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- | 0.1638 | 4.99 | 3175 | 0.1622 | 0.4790 |
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  ### Framework versions
 
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  This model is a fine-tuned version of [ElnaggarLab/ankh-base](https://huggingface.co/ElnaggarLab/ankh-base) on the None dataset.
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  It achieves the following results on the evaluation set:
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+ - Loss: 0.1736
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+ - Q3 Accuracy: 0.5107
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  ## Model description
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  ### Training hyperparameters
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  The following hyperparameters were used during training:
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+ - learning_rate: 1e-05
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  - train_batch_size: 1
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+ - eval_batch_size: 8
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  - seed: 7
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  - distributed_type: multi-GPU
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+ - num_devices: 6
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+ - gradient_accumulation_steps: 2
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+ - total_train_batch_size: 12
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+ - total_eval_batch_size: 48
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  - optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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  - lr_scheduler_type: linear
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+ - lr_scheduler_warmup_ratio: 0.3
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+ - num_epochs: 3
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  ### Training results
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  | Training Loss | Epoch | Step | Validation Loss | Q3 Accuracy |
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  |:-------------:|:-----:|:----:|:---------------:|:-----------:|
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+ | 0.2839 | 1.0 | 848 | 0.2462 | 0.3434 |
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+ | 0.18 | 2.0 | 1696 | 0.1814 | 0.5245 |
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+ | 0.1691 | 3.0 | 2544 | 0.1736 | 0.5107 |
 
 
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  ### Framework versions
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