| name: protein_fitness_prediction | |
| channels: | |
| - pytorch | |
| - bioconda | |
| - conda-forge | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1=conda_forge | |
| - _openmp_mutex=4.5=1_gnu | |
| - abseil-cpp=20200225.2=he1b5a44_2 | |
| - appdirs=1.4.3=py_1 | |
| - argcomplete=1.12.1=pyh9f0ad1d_0 | |
| - argon2-cffi=20.1.0=py37h8f50634_1 | |
| - arrow-cpp=1.0.1=py37h880e8b3_13_cpu | |
| - arviz=0.10.0=py_0 | |
| - async-timeout=3.0.1=py_1000 | |
| - async_generator=1.10=py_0 | |
| - atk=2.36.0=2 | |
| - atk-1.0=2.36.0=h516909a_2 | |
| - atpublic=1.0=py_0 | |
| - attrs=20.2.0=pyh9f0ad1d_0 | |
| - aws-c-common=0.4.59=he1b5a44_0 | |
| - aws-c-event-stream=0.1.6=h84e28f3_5 | |
| - aws-checksums=0.1.9=he252421_2 | |
| - aws-sdk-cpp=1.8.59=h9b98462_1 | |
| - backcall=0.2.0=pyh9f0ad1d_0 | |
| - backports=1.0=py_2 | |
| - backports.functools_lru_cache=1.6.1=py_0 | |
| - bcrypt=3.2.0=py37h8f50634_0 | |
| - billiard=3.6.3.0=py37h8f50634_2 | |
| - binutils_impl_linux-64=2.35=h18a2f87_9 | |
| - binutils_linux-64=2.35=hc3fd857_29 | |
| - biopython=1.78=py37h8f50634_0 | |
| - bleach=3.2.1=pyh9f0ad1d_0 | |
| - blinker=1.4=py_1 | |
| - boto3=1.15.16=pyh9f0ad1d_0 | |
| - brotli=1.0.9=he1b5a44_2 | |
| - brotlipy=0.7.0=py37h8f50634_1000 | |
| - bzip2=1.0.8=h516909a_3 | |
| - c-ares=1.16.1=h516909a_3 | |
| - ca-certificates=2020.12.5=ha878542_0 | |
| - cachetools=4.1.1=py_0 | |
| - cairo=1.16.0=h3fc0475_1005 | |
| - certifi=2020.12.5=py37h89c1867_0 | |
| - cffi=1.14.3=py37h2b28604_0 | |
| - cftime=1.2.1=py37h161383b_1 | |
| - chardet=3.0.4=py37he5f6b98_1008 | |
| - colorama=0.4.3=py_0 | |
| - commonmark=0.9.1=py_0 | |
| - configobj=5.0.6=py_0 | |
| - crcmod=1.7=py37hc8dfbb8_1003 | |
| - cryptography=3.1.1=py37hb09aad4_0 | |
| - cudatoolkit | |
| - cudnn | |
| - curl=7.71.1=he644dc0_8 | |
| - cycler=0.10.0=py_2 | |
| - dbus=1.13.6=he372182_0 | |
| - decorator=4.4.2=py_0 | |
| - defusedxml=0.6.0=py_0 | |
| - distro=1.5.0=pyh9f0ad1d_0 | |
| - dvc=1.8.1=py37hc8dfbb8_0 | |
| - entrypoints=0.3=py37hc8dfbb8_1001 | |
| - expat=2.2.9=he1b5a44_2 | |
| - fastprogress=1.0.0=py_0 | |
| - filelock=3.0.12=pyh9f0ad1d_0 | |
| - flatten-dict=0.3.0=pyh9f0ad1d_0 | |
| - flufl.lock=3.2=py_0 | |
| - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 | |
| - font-ttf-inconsolata=2.001=hab24e00_0 | |
| - font-ttf-source-code-pro=2.030=hab24e00_0 | |
| - font-ttf-ubuntu=0.83=hab24e00_0 | |
| - fontconfig=2.13.1=h1056068_1002 | |
| - fonts-conda-ecosystem=1=0 | |
| - fonts-conda-forge=1=0 | |
| - freetype=2.10.3=he06d7ca_0 | |
| - fribidi=1.0.10=h516909a_0 | |
| - funcy=1.15=pyh9f0ad1d_0 | |
| - future=0.18.2=py37hc8dfbb8_1 | |
| - gcc_impl_linux-64=7.5.0=hd9e1a51_17 | |
| - gcc_linux-64=7.5.0=he2a3fca_29 | |
| - gdk-pixbuf=2.38.2=h3f25603_4 | |
| - gettext=0.19.8.1=hc5be6a0_1002 | |
| - gflags=2.2.2=he1b5a44_1004 | |
| - giflib=5.2.1=h516909a_2 | |
| - gitdb=4.0.5=py_0 | |
| - gitdb2=4.0.2=py_0 | |
| - gitpython=3.1.9=py_0 | |
| - glib=2.66.1=h680cd38_0 | |
| - glog=0.4.0=h49b9bf7_3 | |
| - gmp=6.2.0=he1b5a44_3 | |
| - gobject-introspection=1.66.1=py37h619baee_1 | |
| - google-api-core=1.22.4=pyh9f0ad1d_0 | |
| - google-api-python-client=1.12.3=pyh9f0ad1d_0 | |
| - google-auth-httplib2=0.0.4=pyh9f0ad1d_0 | |
| - google-cloud-core=1.4.3=pyh9f0ad1d_0 | |
| - google-cloud-storage=1.19.0=py_0 | |
| - google-crc32c=1.0.0=py37h193935f_0 | |
| - google-resumable-media=1.1.0=pyh9f0ad1d_0 | |
| - googleapis-common-protos=1.52.0=py37hc8dfbb8_0 | |
| - grandalf=0.6=py_0 | |
| - graphite2=1.3.13=he1b5a44_1001 | |
| - graphviz=2.42.3=h6939c30_2 | |
| - grpc-cpp=1.32.0=h7997a97_1 | |
| - gst-plugins-base=1.14.5=h0935bb2_2 | |
| - gstreamer=1.14.5=h36ae1b5_2 | |
| - gtk2=2.24.32=h194ddfc_3 | |
| - gts=0.7.6=h08bb679_0 | |
| - gxx_impl_linux-64=7.5.0=h7ea4de1_17 | |
| - gxx_linux-64=7.5.0=h547f3ba_29 | |
| - h5py=2.10.0=nompi_py37hf7afa78_105 | |
| - harfbuzz=2.7.2=hee91db6_0 | |
| - hdf4=4.2.13=hf30be14_1003 | |
| - hdf5=1.10.6=nompi_h54c07f9_1110 | |
| - hhsuite=3.3.0=py37pl526hfa133b6_0 | |
| - hmmer=3.3.1=he1b5a44_0 | |
| - httplib2=0.18.1=pyh9f0ad1d_0 | |
| - icu=67.1=he1b5a44_0 | |
| - idna=2.10=pyh9f0ad1d_0 | |
| - importlib-metadata=2.0.0=py_1 | |
| - importlib_metadata=2.0.0=1 | |
| - intel-openmp=2020.2=254 | |
| - invoke=1.4.1=py_0 | |
| - ipykernel=5.3.4=py37h43977f1_0 | |
| - ipython=7.18.1=py37hc6149b9_0 | |
| - ipython_genutils=0.2.0=py_1 | |
| - ipywidgets=7.5.1=pyh9f0ad1d_1 | |
| - isodate=0.6.0=py_1 | |
| - jedi=0.17.2=py37hc8dfbb8_1 | |
| - jinja2=2.11.2=pyh9f0ad1d_0 | |
| - jmespath=0.10.0=pyh9f0ad1d_0 | |
| - joblib=0.17.0=py_0 | |
| - jpeg=9d=h516909a_0 | |
| - jsonpath-ng=1.5.2=pyh9f0ad1d_0 | |
| - jsonschema=3.2.0=py37hc8dfbb8_1 | |
| - jupyter=1.0.0=py_2 | |
| - jupyter_client=6.1.7=py_0 | |
| - jupyter_console=6.2.0=py_0 | |
| - jupyter_core=4.6.3=py37hc8dfbb8_1 | |
| - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0 | |
| - kernel-headers_linux-64=2.6.32=h77966d4_13 | |
| - kiwisolver=1.2.0=py37h99015e2_1 | |
| - knack=0.6.3=py_0 | |
| - krb5=1.17.1=hfafb76e_3 | |
| - lcms2=2.11=hbd6801e_0 | |
| - ld_impl_linux-64=2.35=h769bd43_9 | |
| - libblas | |
| - libcblas | |
| - libclang=10.0.1=default_hde54327_1 | |
| - libcrc32c=1.1.1=he1b5a44_2 | |
| - libcurl=7.71.1=hcdd3856_8 | |
| - libedit=3.1.20191231=he28a2e2_2 | |
| - libev=4.33=h516909a_1 | |
| - libevent=2.1.10=hcdb4288_2 | |
| - libffi=3.2.1=he1b5a44_1007 | |
| - libgcc-devel_linux-64=7.5.0=h42c25f5_17 | |
| - libgcc-ng=9.3.0=h5dbcf3e_17 | |
| - libgfortran-ng=7.5.0=hae1eefd_17 | |
| - libgfortran4=7.5.0=hae1eefd_17 | |
| - libgomp=9.3.0=h5dbcf3e_17 | |
| - libgpuarray=0.7.6=h14c3975_1003 | |
| - libiconv=1.16=h516909a_0 | |
| - liblapack | |
| - libllvm10=10.0.1=he513fc3_3 | |
| - libnetcdf=4.7.4=nompi_hefab0ff_106 | |
| - libnghttp2=1.41.0=h8cfc5f6_2 | |
| - libopenblas | |
| - libpng=1.6.37=hed695b0_2 | |
| - libpq=12.3=h5513abc_0 | |
| - libprotobuf=3.13.0.1=h8b12597_0 | |
| - libsodium=1.0.18=h516909a_1 | |
| - libssh2=1.9.0=hab1572f_5 | |
| - libstdcxx-devel_linux-64=7.5.0=h4084dd6_17 | |
| - libstdcxx-ng=9.3.0=h2ae2ef3_17 | |
| - libthrift=0.13.0=h5aa387f_6 | |
| - libtiff=4.1.0=hc7e4089_6 | |
| - libtool=2.4.6=h516909a_1005 | |
| - libutf8proc=2.5.0=h516909a_2 | |
| - libuuid=2.32.1=h14c3975_1000 | |
| - libwebp=1.1.0=h56121f0_4 | |
| - libwebp-base=1.1.0=h516909a_3 | |
| - libxcb=1.13=h14c3975_1002 | |
| - libxkbcommon=0.10.0=he1b5a44_0 | |
| - libxml2=2.9.10=h68273f3_2 | |
| - llvm-openmp=8.0.1=hc9558a2_0 | |
| - lz4-c=1.9.2=he1b5a44_3 | |
| - mako=1.1.3=pyh9f0ad1d_0 | |
| - markupsafe=1.1.1=py37hb5d75c8_2 | |
| - matplotlib-base=3.3.2=py37hd478181_0 | |
| - mistune=0.8.4=py37h8f50634_1002 | |
| - mkl=2020.2=256 | |
| - mkl-service=2.3.0=py37h8f50634_2 | |
| - msrest=0.6.19=pyh9f0ad1d_0 | |
| - mysql-common=8.0.21=2 | |
| - mysql-libs=8.0.21=hf3661c5_2 | |
| - nanotime=0.5.2=py_0 | |
| - nbclient=0.5.0=py_0 | |
| - nbconvert=6.0.7=py37hc8dfbb8_0 | |
| - nbformat=5.0.7=py_0 | |
| - ncurses=6.2=he1b5a44_2 | |
| - nest-asyncio=1.4.1=py_0 | |
| - netcdf4=1.5.4=nompi_py37hcbfd489_103 | |
| - networkx=2.4=py_1 | |
| - ninja=1.10.2=h4bd325d_0 | |
| - notebook=6.1.4=py37hc8dfbb8_0 | |
| - nspr=4.29=he1b5a44_0 | |
| - nss=3.57=he751ad9_0 | |
| - numpy=1.18.5=py37h8960a57_0 | |
| - oauth2client=4.1.3=py_0 | |
| - olefile=0.46=py_0 | |
| - openmp=8.0.1=0 | |
| - openssl=1.1.1i=h7f98852_0 | |
| - orc=1.6.5=hd3605a7_0 | |
| - oss2=2.13.0=py37hc8dfbb8_0 | |
| - packaging=20.4=pyh9f0ad1d_0 | |
| - pandas=1.1.3=py37h9fdb41a_2 | |
| - pandoc=2.11=hd18ef5c_0 | |
| - pandocfilters=1.4.2=py_1 | |
| - pango=1.42.4=h7062337_4 | |
| - paramiko=2.7.2=pyh9f0ad1d_0 | |
| - parquet-cpp=1.5.1=2 | |
| - parso=0.7.0=pyh9f0ad1d_0 | |
| - pathlib2=2.3.5=py37hc8dfbb8_1 | |
| - pathspec=0.8.0=pyh9f0ad1d_0 | |
| - patsy=0.5.1=py_0 | |
| - pcre=8.44=he1b5a44_0 | |
| - perl=5.26.2=h516909a_1006 | |
| - pexpect=4.8.0=py37hc8dfbb8_1 | |
| - pickleshare=0.7.5=py37hc8dfbb8_1001 | |
| - pillow=7.2.0=py37h718be6c_2 | |
| - pip=20.2.3=py_0 | |
| - pixman=0.38.0=h516909a_1003 | |
| - prometheus_client=0.8.0=pyh9f0ad1d_0 | |
| - prompt-toolkit=3.0.8=py_0 | |
| - prompt_toolkit=3.0.8=0 | |
| - pthread-stubs=0.4=h14c3975_1001 | |
| - ptyprocess=0.6.0=py_1001 | |
| - pyaml=20.4.0=pyh9f0ad1d_0 | |
| - pyarrow=1.0.1=py37hcae2be3_13_cpu | |
| - pyasn1=0.4.8=py_0 | |
| - pycparser=2.20=pyh9f0ad1d_2 | |
| - pycryptodome=3.9.8=py37hb05bdb2_1 | |
| - pydot=1.4.1=py37hc8dfbb8_1002 | |
| - pydrive2=1.6.2=pyh9f0ad1d_0 | |
| - pygments=2.7.1=py_0 | |
| - pygpu=0.7.6=py37h161383b_1002 | |
| - pygtrie=2.3.2=pyh8c360ce_0 | |
| - pyjwt=1.7.1=py_0 | |
| - pymc3=3.9.3=py_1 | |
| - pynacl=1.4.0=py37h8f50634_1 | |
| - pyopenssl=19.1.0=py_1 | |
| - pyparsing=2.4.7=pyh9f0ad1d_0 | |
| - pyqt=5.12.3=py37h8685d9f_3 | |
| - pyrsistent=0.17.3=py37h8f50634_1 | |
| - pysocks=1.7.1=py37he5f6b98_2 | |
| - python=3.7.6=cpython_h8356626_6 | |
| - python-dateutil=2.8.1=py_0 | |
| - python_abi=3.7=1_cp37m | |
| - pytorch | |
| - pytz=2020.1=pyh9f0ad1d_0 | |
| - pyyaml=5.3.1=py37hb5d75c8_1 | |
| - pyzmq=19.0.2=py37hac76be4_2 | |
| - qt=5.12.9=h1f2b2cb_0 | |
| - qtconsole=4.7.7=pyh9f0ad1d_0 | |
| - qtpy=1.9.0=py_0 | |
| - re2=2020.10.01=he1b5a44_0 | |
| - readline=8.0=he28a2e2_2 | |
| - requests=2.24.0=pyh9f0ad1d_0 | |
| - requests-oauthlib=1.3.0=pyh9f0ad1d_0 | |
| - rich=8.0.0=py37hc8dfbb8_0 | |
| - ruamel.yaml=0.16.12=py37h8f50634_1 | |
| - ruamel.yaml.clib=0.2.2=py37h8f50634_1 | |
| - s3transfer=0.3.3=py37hc8dfbb8_1 | |
| - scikit-learn=0.23.1=py37h8a51577_0 | |
| - scikit-optimize=0.8.1=pyh9f0ad1d_0 | |
| - seaborn=0.10.1=1 | |
| - seaborn-base=0.10.1=py_1 | |
| - send2trash=1.5.0=py_0 | |
| - setuptools=49.6.0=py37he5f6b98_2 | |
| - setuptools-scm=4.1.2=pyh9f0ad1d_0 | |
| - setuptools_scm=4.1.2=0 | |
| - shortuuid=1.0.1=py37hc8dfbb8_3 | |
| - shtab=1.3.2=pyh9f0ad1d_0 | |
| - simplejson=3.17.2=py37h8f50634_1 | |
| - six=1.15.0=pyh9f0ad1d_0 | |
| - smmap=3.0.4=pyh9f0ad1d_0 | |
| - snappy=1.1.8=he1b5a44_3 | |
| - sqlite=3.33.0=h4cf870e_1 | |
| - statsmodels=0.12.0=py37h8f50634_0 | |
| - sysroot_linux-64=2.12=h77966d4_13 | |
| - tabulate=0.8.7=pyh9f0ad1d_0 | |
| - terminado=0.9.1=py37hc8dfbb8_0 | |
| - testpath=0.4.4=py_0 | |
| - theano=1.0.5=py37h745909e_1 | |
| - threadpoolctl=2.1.0=pyh5ca1d4c_0 | |
| - tk=8.6.10=hed695b0_1 | |
| - toml=0.10.1=pyh9f0ad1d_0 | |
| - torchaudio | |
| - torchvision | |
| - tornado=6.0.4=py37h8f50634_2 | |
| - tqdm=4.50.2=pyh9f0ad1d_0 | |
| - traitlets=5.0.4=py_1 | |
| - typing=3.7.4.3=py37hc8dfbb8_1 | |
| - typing_extensions=3.7.4.2=py_0 | |
| - uritemplate=3.0.1=py_0 | |
| - voluptuous=0.11.7=py_0 | |
| - wcwidth=0.2.5=pyh9f0ad1d_2 | |
| - webencodings=0.5.1=py_1 | |
| - wheel=0.35.1=pyh9f0ad1d_0 | |
| - widgetsnbextension=3.5.1=py37hc8dfbb8_1 | |
| - xarray=0.16.1=py_0 | |
| - xlrd=1.2.0=pyh9f0ad1d_1 | |
| - xorg-kbproto=1.0.7=h14c3975_1002 | |
| - xorg-libice=1.0.10=h516909a_0 | |
| - xorg-libsm=1.2.3=h84519dc_1000 | |
| - xorg-libx11=1.6.12=h516909a_0 | |
| - xorg-libxau=1.0.9=h14c3975_0 | |
| - xorg-libxdmcp=1.1.3=h516909a_0 | |
| - xorg-libxext=1.3.4=h516909a_0 | |
| - xorg-libxpm=3.5.13=h516909a_0 | |
| - xorg-libxrender=0.9.10=h516909a_1002 | |
| - xorg-libxt=1.1.5=h516909a_1003 | |
| - xorg-renderproto=0.11.1=h14c3975_1002 | |
| - xorg-xextproto=7.3.0=h14c3975_1002 | |
| - xorg-xproto=7.0.31=h14c3975_1007 | |
| - xz=5.2.5=h516909a_1 | |
| - yaml=0.2.5=h516909a_0 | |
| - zc.lockfile=2.0=py_0 | |
| - zeromq=4.3.3=he1b5a44_2 | |
| - zipp=3.3.0=py_0 | |
| - zlib=1.2.11=h516909a_1009 | |
| - zstd=1.4.5=h6597ccf_2 | |
| - pip: | |
| - absl-py==0.9.0 | |
| - aiohttp==3.6.3 | |
| - aiohttp-cors==0.7.0 | |
| - aioredis==1.3.1 | |
| - astunparse==1.6.3 | |
| - awscli==1.18.145 | |
| - beautifulsoup4==4.9.3 | |
| - blessings==1.7 | |
| - bokeh==2.2.2 | |
| - botocore==1.18.4 | |
| - click==7.1.2 | |
| - cloudpickle==1.3.0 | |
| - colorful==0.5.4 | |
| - dpath==2.0.1 | |
| - editdistance==0.5.3 | |
| - fair-esm==0.3.1 | |
| - evcouplings==0.1.1 | |
| - gast==0.3.3 | |
| - google==3.0.0 | |
| - google-auth==1.18.0 | |
| - google-auth-oauthlib==0.4.1 | |
| - google-pasta==0.2.0 | |
| - gpustat==0.6.0 | |
| - grpcio==1.30.0 | |
| - hiredis==1.1.0 | |
| - keras-preprocessing==1.1.2 | |
| - llvmlite==0.34.0 | |
| - markdown==3.2.2 | |
| - mmtf-python==1.1.2 | |
| - msgpack==1.0.0 | |
| - multidict==4.7.6 | |
| - numba==0.51.2 | |
| - nvidia-ml-py3==7.352.0 | |
| - oauthlib==3.1.0 | |
| - opencensus==0.7.10 | |
| - opencensus-context==0.1.1 | |
| - opt-einsum==3.2.1 | |
| - ply==3.11 | |
| - protobuf==3.12.2 | |
| - psutil==5.7.2 | |
| - py-spy==0.3.3 | |
| - pyasn1-modules==0.2.8 | |
| - pynverse==0.1.4.4 | |
| - pyqt5-sip==4.19.18 | |
| - pyqtchart==5.12 | |
| - pyqtwebengine==5.12.1 | |
| - redis==3.4.1 | |
| - rsa==4.5 | |
| - scipy==1.4.1 | |
| - scons==4.0.1 | |
| - sklearn==0.0 | |
| - soupsieve==2.0.1 | |
| - tensorboard==2.2.2 | |
| - tensorboard-plugin-wit==1.7.0 | |
| - tensorflow==2.2.0 | |
| - tensorflow-addons==0.10.0 | |
| - tensorflow-estimator==2.2.0 | |
| - tensorflow-probability==0.10.1 | |
| - termcolor==1.1.0 | |
| - typeguard==2.9.1 | |
| - typing-extensions==3.7.4.3 | |
| - urllib3==1.25.9 | |
| - werkzeug==1.0.1 | |
| - wrapt==1.12.1 | |
| - yarl==1.5.1 | |