| ''' | |
| Converts tblout outputs from hmmer to uniprot ids. | |
| ''' | |
| import argparse | |
| import csv | |
| if __name__ == '__main__': | |
| parser = argparse.ArgumentParser() | |
| parser.add_argument('input_file', type=str) | |
| parser.add_argument('output_file', type=str) | |
| args = parser.parse_args() | |
| with open(args.input_file) as tbl_file: | |
| with open(args.output_file, 'w+') as id_list: | |
| for line in tbl_file.readlines(): | |
| # skip comments | |
| if line[0] == '#' or len(line) == 0: | |
| continue | |
| id_list.write(line.split(' ')[0]) | |
| id_list.write('\n') | |