Update environment.yml

environment.yml

@@ -1,122 +1,217 @@
 name: gennet
 channels:
-- https://conda.anaconda.org/anaconda
-- https://conda.anaconda.org/bioconda
-- https://conda.anaconda.org/conda-forge
+  - anaconda
+  - bioconda
+  - conda-forge
+  - defaults
 dependencies:
-- python==3.7.12
-- _libgcc_mutex=0.1=main
-- _openmp_mutex=5.1=1_gnu
-- abseil-cpp=20210324.2=h9c3ff4c_0
-- absl-py=1.4.0=pyhd8ed1ab_0
-- aiohttp=3.7.4.post0=py37h5e8e339_1
-- astunparse=1.6.3=pyhd8ed1ab_0
-- async-timeout=3.0.1=py_1000
-- attrs=23.1.0=pyh71513ae_1
-- blas=1.0=openblas
-- blinker=1.6.2=pyhd8ed1ab_0
-- brotlipy=0.7.0=py37h540881e_1004
-- c-ares=1.18.1=h7f98852_0
-- ca-certificates=2023.5.7=hbcca054_0
-- cached-property=1.5.2=hd8ed1ab_1
-- cached_property=1.5.2=pyha770c72_1
-- cachetools=5.3.0=pyhd8ed1ab_0
-- certifi=2023.5.7=pyhd8ed1ab_0
-- cffi=1.15.0=py37h036bc23_0
-- chardet=4.0.0=py37h89c1867_3
-- charset-normalizer=3.1.0=pyhd8ed1ab_0
-- click=8.1.3=py37h89c1867_0
-- cryptography=37.0.2=py37h38fbfac_0
-- gast=0.5.3=pyhd8ed1ab_0
-- giflib=5.2.1=h36c2ea0_2
-- google-auth=2.20.0=pyh1a96a4e_0
-- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
-- google-pasta=0.2.0=pyh8c360ce_0
-- grpc-cpp=1.43.2=h9e046d8_3
-- grpcio=1.43.0=py37hb27c1af_0
-- h5py=3.6.0=nompi_py37hd308b1e_100
-- hdf5=1.12.1=nompi_h2386368_104
-- icu=70.1=h27087fc_0
-- idna=3.4=pyhd8ed1ab_0
-- importlib-metadata=4.11.4=py37h89c1867_0
-- jpeg=9e=h166bdaf_1
-- keras=2.8.0=pyhd8ed1ab_0
-- keras-preprocessing=1.1.2=pyhd8ed1ab_0
-- keyutils=1.6.1=h166bdaf_0
-- krb5=1.19.3=h3790be6_0
-- ld_impl_linux-64=2.40=h41732ed_0
-- libblas=3.9.0=16_linux64_openblas
-- libcblas=3.9.0=16_linux64_openblas
-- libcurl=7.83.1=h7bff187_0
-- libedit=3.1.20191231=he28a2e2_2
-- libev=4.33=h516909a_1
-- libffi=3.4.2=h7f98852_5
-- libgcc=7.2.0=h69d50b8_2
-- libgcc-ng=11.2.0=h1234567_1
-- libgfortran-ng=11.2.0=h00389a5_1
-- libgfortran5=11.2.0=h1234567_1
-- libgomp=11.2.0=h1234567_1
-- liblapack=3.9.0=16_linux64_openblas
-- libnghttp2=1.47.0=h727a467_0
-- libnsl=2.0.0=h7f98852_0
-- libopenblas=0.3.21=h043d6bf_0
-- libpng=1.6.37=h21135ba_2
-- libprotobuf=3.19.4=h780b84a_0
-- libssh2=1.10.0=ha56f1ee_2
-- libstdcxx-ng=11.2.0=h1234567_1
-- libzlib=1.2.11=h166bdaf_1014
-- markdown=3.4.3=pyhd8ed1ab_0
-- markupsafe=2.1.1=py37h540881e_1
-- multidict=6.0.2=py37h540881e_1
-- ncurses=6.3=h27087fc_1
-- nomkl=3.0=0
-- numpy=1.21.6=py37h976b520_0
-- oauthlib=3.2.2=pyhd8ed1ab_0
-- openblas=0.3.21=h06a4308_0
-- openblas-devel=0.3.21=h06a4308_0
-- openssl=1.1.1o=h166bdaf_0
-- opt_einsum=3.3.0=pyhd8ed1ab_1
-- pip=23.1.2=pyhd8ed1ab_0
-- plink=1.90b6.21=hec16e2b_2
-- plink2=2.00a2.3=hb2a7ceb_2
-- protobuf=3.19.4=py37hcd2ae1e_0
-- pyasn1=0.4.8=py_0
-- pyasn1-modules=0.2.7=py_0
-- pycparser=2.21=pyhd8ed1ab_0
-- pyjwt=2.7.0=pyhd8ed1ab_0
-- pyopenssl=22.0.0=pyhd8ed1ab_1
-- pysocks=1.7.1=py37h89c1867_5
-- python=3.7.12=hb7a2778_100_cpython
-- python-flatbuffers=23.5.26=pyhd8ed1ab_0
-- python_abi=3.7=3_cp37m
-- pyu2f=0.1.5=pyhd8ed1ab_0
-- re2=2022.02.01=h9c3ff4c_0
-- readline=8.1=h46c0cb4_0
-- requests=2.31.0=pyhd8ed1ab_0
-- requests-oauthlib=1.3.1=pyhd8ed1ab_0
-- rsa=4.9=pyhd8ed1ab_0
-- scipy=1.7.3=py37hf2a6cf1_0
-- setuptools=68.0.0=pyhd8ed1ab_0
-- six=1.16.0=pyh6c4a22f_0
-- snappy=1.1.9=hbd366e4_1
-- sqlite=3.38.5=h4ff8645_0
-- tensorboard=2.8.0=pyhd8ed1ab_1
-- tensorboard-data-server=0.6.0=py37h38fbfac_2
-- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
-- tensorflow=2.8.0=cpu_py37h08536eb_0
-- tensorflow-base=2.8.0=cpu_py37h4373017_0
-- tensorflow-cpu=2.8.0=cpu_py37h718b53a_0
-- tensorflow-estimator=2.8.0=cpu_py37h813ee39_0
-- termcolor=2.3.0=pyhd8ed1ab_0
-- tk=8.6.12=h27826a3_0
-- typing-extensions=4.6.3=hd8ed1ab_0
-- typing_extensions=4.6.3=pyha770c72_0
-- urllib3=1.26.15=pyhd8ed1ab_0
-- werkzeug=2.2.3=pyhd8ed1ab_0
-- wheel=0.40.0=pyhd8ed1ab_0
-- wrapt=1.14.1=py37h540881e_0
-- xz=5.2.5=h516909a_1
-- yarl=1.7.2=py37h540881e_2
-- zipp=3.15.0=pyhd8ed1ab_0
-- zlib=1.2.11=h166bdaf_1014
-
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=2_gnu
+  - abseil-cpp=20210324.2=h9c3ff4c_0
+  - absl-py=1.4.0=pyhd8ed1ab_0
+  - aiohttp=3.7.4.post0=py37h5e8e339_1
+  - astunparse=1.6.3=pyhd8ed1ab_0
+  - async-timeout=3.0.1=py_1000
+  - attrs=23.1.0=pyh71513ae_1
+  - binutils_impl_linux-64=2.40=hf600244_0
+  - blas=1.0=openblas
+  - blinker=1.6.2=pyhd8ed1ab_0
+  - brotlipy=0.7.0=py37h540881e_1004
+  - c-ares=1.18.1=h7f98852_0
+  - ca-certificates=2023.5.7=hbcca054_0
+  - cached-property=1.5.2=hd8ed1ab_1
+  - cached_property=1.5.2=pyha770c72_1
+  - cachetools=5.3.0=pyhd8ed1ab_0
+  - certifi=2023.5.7=pyhd8ed1ab_0
+  - cffi=1.15.0=py37h036bc23_0
+  - chardet=4.0.0=py37h89c1867_3
+  - charset-normalizer=3.1.0=pyhd8ed1ab_0
+  - click=8.1.3=py37h89c1867_0
+  - cryptography=37.0.2=py37h38fbfac_0
+  - gast=0.5.3=pyhd8ed1ab_0
+  - gcc=12.1.0=h9ea6d83_10
+  - gcc_impl_linux-64=12.1.0=hea43390_17
+  - giflib=5.2.1=h36c2ea0_2
+  - google-auth=2.20.0=pyh1a96a4e_0
+  - google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
+  - google-pasta=0.2.0=pyh8c360ce_0
+  - grpc-cpp=1.43.2=h9e046d8_3
+  - grpcio=1.43.0=py37hb27c1af_0
+  - h5py=3.6.0=nompi_py37hd308b1e_100
+  - hdf5=1.12.1=nompi_h2386368_104
+  - icu=70.1=h27087fc_0
+  - idna=3.4=pyhd8ed1ab_0
+  - importlib-metadata=4.11.4=py37h89c1867_0
+  - jpeg=9e=h166bdaf_1
+  - keras=2.8.0=pyhd8ed1ab_0
+  - keras-preprocessing=1.1.2=pyhd8ed1ab_0
+  - kernel-headers_linux-64=2.6.32=he073ed8_15
+  - keyutils=1.6.1=h166bdaf_0
+  - krb5=1.19.3=h3790be6_0
+  - ld_impl_linux-64=2.40=h41732ed_0
+  - libblas=3.9.0=16_linux64_openblas
+  - libcblas=3.9.0=16_linux64_openblas
+  - libcurl=7.83.1=h7bff187_0
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=h516909a_1
+  - libffi=3.4.2=h7f98852_5
+  - libgcc=7.2.0=h69d50b8_2
+  - libgcc-devel_linux-64=12.1.0=h1ec3361_17
+  - libgcc-ng=13.1.0=he5830b7_0
+  - libgfortran-ng=11.2.0=h00389a5_1
+  - libgfortran5=11.2.0=h1234567_1
+  - libgomp=13.1.0=he5830b7_0
+  - liblapack=3.9.0=16_linux64_openblas
+  - libnghttp2=1.47.0=h727a467_0
+  - libnsl=2.0.0=h7f98852_0
+  - libopenblas=0.3.21=h043d6bf_0
+  - libpng=1.6.37=h21135ba_2
+  - libprotobuf=3.19.4=h780b84a_0
+  - libsanitizer=12.1.0=ha89aaad_17
+  - libssh2=1.10.0=ha56f1ee_2
+  - libstdcxx-ng=13.1.0=hfd8a6a1_0
+  - libzlib=1.2.11=h166bdaf_1014
+  - markdown=3.4.3=pyhd8ed1ab_0
+  - markupsafe=2.1.1=py37h540881e_1
+  - multidict=6.0.2=py37h540881e_1
+  - ncurses=6.3=h27087fc_1
+  - nomkl=3.0=0
+  - numpy=1.21.6=py37h976b520_0
+  - oauthlib=3.2.2=pyhd8ed1ab_0
+  - openblas=0.3.21=h06a4308_0
+  - openblas-devel=0.3.21=h06a4308_0
+  - openssl=1.1.1o=h166bdaf_0
+  - opt_einsum=3.3.0=pyhd8ed1ab_1
+  - pip=23.1.2=pyhd8ed1ab_0
+  - plink2=2.00a2.3=hb2a7ceb_2
+  - protobuf=3.19.4=py37hcd2ae1e_0
+  - pyasn1=0.4.8=py_0
+  - pyasn1-modules=0.2.7=py_0
+  - pycparser=2.21=pyhd8ed1ab_0
+  - pyjwt=2.7.0=pyhd8ed1ab_0
+  - pyopenssl=22.0.0=pyhd8ed1ab_1
+  - pysocks=1.7.1=py37h89c1867_5
+  - python=3.7.12=hb7a2778_100_cpython
+  - python-flatbuffers=23.5.26=pyhd8ed1ab_0
+  - python_abi=3.7=3_cp37m
+  - pyu2f=0.1.5=pyhd8ed1ab_0
+  - re2=2022.02.01=h9c3ff4c_0
+  - readline=8.1=h46c0cb4_0
+  - requests=2.31.0=pyhd8ed1ab_0
+  - requests-oauthlib=1.3.1=pyhd8ed1ab_0
+  - rsa=4.9=pyhd8ed1ab_0
+  - scipy=1.7.3=py37hf2a6cf1_0
+  - setuptools=68.0.0=pyhd8ed1ab_0
+  - six=1.16.0=pyh6c4a22f_0
+  - snappy=1.1.9=hbd366e4_1
+  - sqlite=3.38.5=h4ff8645_0
+  - sysroot_linux-64=2.12=he073ed8_15
+  - tensorboard=2.8.0=pyhd8ed1ab_1
+  - tensorboard-data-server=0.6.0=py37h38fbfac_2
+  - tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
+  - tensorflow=2.8.0=cpu_py37h08536eb_0
+  - tensorflow-base=2.8.0=cpu_py37h4373017_0
+  - tensorflow-cpu=2.8.0=cpu_py37h718b53a_0
+  - tensorflow-estimator=2.8.0=cpu_py37h813ee39_0
+  - termcolor=2.3.0=pyhd8ed1ab_0
+  - tk=8.6.12=h27826a3_0
+  - typing-extensions=4.6.3=hd8ed1ab_0
+  - typing_extensions=4.6.3=pyha770c72_0
+  - urllib3=1.26.15=pyhd8ed1ab_0
+  - werkzeug=2.2.3=pyhd8ed1ab_0
+  - wheel=0.40.0=pyhd8ed1ab_0
+  - wrapt=1.14.1=py37h540881e_0
+  - xz=5.2.5=h516909a_1
+  - yarl=1.7.2=py37h540881e_2
+  - zipp=3.15.0=pyhd8ed1ab_0
+  - zlib=1.2.11=h166bdaf_1014
+  - pip:
+    - anyio==3.7.0
+    - argon2-cffi==21.3.0
+    - argon2-cffi-bindings==21.2.0
+    - backcall==0.2.0
+    - beautifulsoup4==4.12.2
+    - bitarray==2.7.6
+    - bleach==6.0.0
+    - cycler==0.11.0
+    - debugpy==1.6.7
+    - decorator==5.1.1
+    - defusedxml==0.7.1
+    - entrypoints==0.4
+    - exceptiongroup==1.1.1
+    - fastjsonschema==2.17.1
+    - fonttools==4.38.0
+    - future==0.18.3
+    - importlib-resources==5.12.0
+    - iniconfig==2.0.0
+    - ipykernel==6.16.2
+    - ipython==7.34.0
+    - ipython-genutils==0.2.0
+    - ipywidgets==8.0.6
+    - jedi==0.18.2
+    - jinja2==3.1.2
+    - joblib==1.2.0
+    - jsonschema==4.17.3
+    - jupyter==1.0.0
+    - jupyter-client==7.4.9
+    - jupyter-console==6.6.3
+    - jupyter-core==4.12.0
+    - jupyter-server==1.24.0
+    - jupyterlab-pygments==0.2.2
+    - jupyterlab-widgets==3.0.7
+    - kaleido==0.2.1
+    - kiwisolver==1.4.4
+    - matplotlib==3.5.3
+    - matplotlib-inline==0.1.6
+    - mistune==3.0.1
+    - nbclassic==1.0.0
+    - nbclient==0.7.4
+    - nbconvert==7.6.0
+    - nbformat==5.8.0
+    - nest-asyncio==1.5.6
+    - notebook==6.5.4
+    - notebook-shim==0.2.3
+    - numexpr==2.8.4
+    - packaging==23.1
+    - pandas==1.3.5
+    - pandocfilters==1.5.0
+    - parso==0.8.3
+    - pexpect==4.8.0
+    - pickleshare==0.7.5
+    - pillow==9.5.0
+    - pkgutil-resolve-name==1.3.10
+    - plink==2.0
+    - plotly==5.15.0
+    - pluggy==1.2.0
+    - prometheus-client==0.17.0
+    - prompt-toolkit==3.0.38
+    - psutil==5.9.5
+    - ptyprocess==0.7.0
+    - pygments==2.15.1
+    - pyparsing==3.1.0
+    - pyrsistent==0.19.3
+    - pytest==7.4.0
+    - python-dateutil==2.8.2
+    - pytz==2023.3
+    - pyzmq==25.1.0
+    - qtconsole==5.4.3
+    - qtpy==2.3.1
+    - scikit-learn==1.0.2
+    - seaborn==0.12.2
+    - send2trash==1.8.2
+    - sklearn==0.0.post5
+    - sniffio==1.3.0
+    - soupsieve==2.4.1
+    - tables==3.7.0
+    - tenacity==8.2.2
+    - terminado==0.17.1
+    - threadpoolctl==3.1.0
+    - tinycss2==1.2.1
+    - tomli==2.0.1
+    - tornado==6.2
+    - tqdm==4.65.0
+    - traitlets==5.9.0
+    - wcwidth==0.2.6
+    - webencodings==0.5.1
+    - websocket-client==1.6.1
+    - widgetsnbextension==4.0.7