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# MedCLIP
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Each image is accompanied by a text caption. The caption length varies from a few characters (a single word) to 2,000 characters. During preprocessing we remove all images that has a caption shorter than 10 characters.
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Training set: 57,780 images with their caption.
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Validation set: 7.200
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Test set: 7,650
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This is the validation loss curve we observed when we trained the model using the `run_medclip.sh` script.
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# MedCLIP: Fine-tuning a CLIP model on the ROCO medical dataset
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<!--  -->
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<h3 align="center">
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<!-- <p>MedCLIP</p> -->
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<img src="./assets/logo.png" alt="huggingface-medclip" width="250" height="250">
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## Summary
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This repository contains the code for fine-tuning a CLIP model on the [ROCO dataset](https://github.com/razorx89/roco-dataset), a dataset made of radiology images and a caption.
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This work is done as a part of the [**Flax/Jax community week**](https://github.com/huggingface/transformers/blob/master/examples/research_projects/jax-projects/README.md#quickstart-flax-and-jax-in-transformers) organized by Hugging Face and Google.
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### Demo
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You can try a Streamlit demo app that uses this model on [🤗 Spaces](https://huggingface.co/spaces/kaushalya/medclip-roco). You may have to signup for 🤗 Spaces private beta to access this app (screenshot shown below).
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🤗 Hub Model card: https://huggingface.co/flax-community/medclip-roco
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## Dataset
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Each image is accompanied by a text caption. The caption length varies from a few characters (a single word) to 2,000 characters. During preprocessing we remove all images that has a caption shorter than 10 characters.
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Training set: 57,780 images with their caption.
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Validation set: 7.200
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Test set: 7,650
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[ ] Give an example
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## Installation 💽
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This repo depends on the master branch of [Hugging Face - Transformers library](https://github.com/huggingface/transformers). First you need to clone the transformers repository and then install it locally (preferably inside a virtual environment) with `pip install -e ".[flax]"`.
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## Model
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You can load the pretrained model from the Hugging Face Hub with
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```
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from medclip.modeling_hybrid_clip import FlaxHybridCLIP
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model = FlaxHybridCLIP.from_pretrained("flax-community/medclip-roco")
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```
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## Training
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The model is trained using Flax/JAX on a cloud TPU-v3-8.
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You can fine-tune a CLIP model implemented in Flax by simply running `sh run_medclip`.
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This is the validation loss curve we observed when we trained the model using the `run_medclip.sh` script.
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## TODO
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[ ] Evaluation on down-stream tasks
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[ ] Zero-shot learning performance
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[ ] Merge the demo app
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assets/logo.png
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assets/streamlit_app.png
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