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---
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language: en
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tags:
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- medical-imaging
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- mri
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- self-supervised
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- 3d
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- neuroimaging
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license: apache-2.0
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library_name: pytorch
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datasets:
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- custom
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---
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# SimCLR-MRI Pre-trained Encoder (SeqAug)
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This repository contains a pre-trained 3D CNN encoder for MRI analysis. The model was trained using contrastive learning (SimCLR) with Bloch equation simulations to generate multi-contrast views of the same anatomy.
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## Model Description
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The encoder is a 3D CNN with 5 convolutional blocks (64, 128, 256, 512, 768 channels), outputting 768-dimensional features. This SeqAug variant treats different simulated MRI sequences as strong augmentations during contrastive learning, encouraging sequence-robust representations.
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### Training Procedure
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- **Pre-training Data**: 51 qMRI datasets (22 healthy, 29 stroke subjects)
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- **Augmentations**: Bloch simulation-based sequence augmentation + standard transformations
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- **Input**: 3D MRI volumes (96×96×96)
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- **Output**: 768-dimensional feature vectors
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## Intended Uses
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This encoder is particularly suited for:
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- Cross-sequence transfer learning
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- Multi-contrast MRI analysis
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- Sequence-robust feature extraction
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