| { | |
| "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", | |
| "version": "0.2.3", | |
| "changelog": { | |
| "0.2.3": "fix PYTHONPATH in readme.md", | |
| "0.2.2": "add name tag", | |
| "0.2.1": "fix license Copyright error", | |
| "0.2.0": "update license files", | |
| "0.1.2": "Add training support for whole brain segmentation, users can use active learning in the MONAI Label", | |
| "0.1.1": "Fix dimension according to MONAI 1.0 and fix readme file", | |
| "0.1.0": "complete the model package" | |
| }, | |
| "monai_version": "1.0.0", | |
| "pytorch_version": "1.10.0", | |
| "numpy_version": "1.21.2", | |
| "optional_packages_version": { | |
| "nibabel": "3.2.1", | |
| "pytorch-ignite": "0.4.8", | |
| "einops": "0.4.1", | |
| "fire": "0.4.0", | |
| "timm": "0.6.7", | |
| "torchvision": "0.11.1" | |
| }, | |
| "name": "Whole brain large UNEST segmentation", | |
| "task": "Whole Brain Segmentation", | |
| "description": "A 3D transformer-based model for whole brain segmentation from T1W MRI image", | |
| "authors": "Vanderbilt University + MONAI team", | |
| "copyright": "Copyright (c) MONAI Consortium", | |
| "data_source": "", | |
| "data_type": "nibabel", | |
| "image_classes": "single channel data, intensity scaled to [0, 1]", | |
| "label_classes": "133 Classes", | |
| "pred_classes": "133 Classes", | |
| "eval_metrics": { | |
| "mean_dice": 0.71 | |
| }, | |
| "intended_use": "This is an example, not to be used for diagnostic purposes", | |
| "references": [ | |
| "Xin, et al. Characterizing Renal Structures with 3D Block Aggregate Transformers. arXiv preprint arXiv:2203.02430 (2022). https://arxiv.org/pdf/2203.02430.pdf" | |
| ], | |
| "network_data_format": { | |
| "inputs": { | |
| "image": { | |
| "type": "image", | |
| "format": "hounsfield", | |
| "modality": "MRI", | |
| "num_channels": 1, | |
| "spatial_shape": [ | |
| 96, | |
| 96, | |
| 96 | |
| ], | |
| "dtype": "float32", | |
| "value_range": [ | |
| 0, | |
| 1 | |
| ], | |
| "is_patch_data": true, | |
| "channel_def": { | |
| "0": "image" | |
| } | |
| } | |
| }, | |
| "outputs": { | |
| "pred": { | |
| "type": "image", | |
| "format": "segmentation", | |
| "num_channels": 133, | |
| "spatial_shape": [ | |
| 96, | |
| 96, | |
| 96 | |
| ], | |
| "dtype": "float32", | |
| "value_range": [ | |
| 0, | |
| 1 | |
| ], | |
| "is_patch_data": true, | |
| "channel_def": { | |
| "0": "background", | |
| "1": "3rd-Ventricle", | |
| "2": "4th-Ventricle", | |
| "3": "Right-Accumbens-Area", | |
| "4": "Left-Accumbens-Area", | |
| "5": "Right-Amygdala", | |
| "6": "Left-Amygdala", | |
| "7": "Brain-Stem", | |
| "8": "Right-Caudate", | |
| "9": "Left-Caudate", | |
| "10": "Right-Cerebellum-Exterior", | |
| "11": "Left-Cerebellum-Exterior", | |
| "12": "Right-Cerebellum-White-Matter", | |
| "13": "Left-Cerebellum-White-Matter", | |
| "14": "Right-Cerebral-White-Matter", | |
| "15": "Left-Cerebral-White-Matter", | |
| "16": "Right-Hippocampus", | |
| "17": "Left-Hippocampus", | |
| "18": "Right-Inf-Lat-Vent", | |
| "19": "Left-Inf-Lat-Vent", | |
| "20": "Right-Lateral-Ventricle", | |
| "21": "Left-Lateral-Ventricle", | |
| "22": "Right-Pallidum", | |
| "23": "Left-Pallidum", | |
| "24": "Right-Putamen", | |
| "25": "Left-Putamen", | |
| "26": "Right-Thalamus-Proper", | |
| "27": "Left-Thalamus-Proper", | |
| "28": "Right-Ventral-DC", | |
| "29": "Left-Ventral-DC", | |
| "30": "Cerebellar-Vermal-Lobules-I-V", | |
| "31": "Cerebellar-Vermal-Lobules-VI-VII", | |
| "32": "Cerebellar-Vermal-Lobules-VIII-X", | |
| "33": "Left-Basal-Forebrain", | |
| "34": "Right-Basal-Forebrain", | |
| "35": "Right-ACgG--anterior-cingulate-gyrus", | |
| "36": "Left-ACgG--anterior-cingulate-gyrus", | |
| "37": "Right-AIns--anterior-insula", | |
| "38": "Left-AIns--anterior-insula", | |
| "39": "Right-AOrG--anterior-orbital-gyrus", | |
| "40": "Left-AOrG--anterior-orbital-gyrus", | |
| "41": "Right-AnG---angular-gyrus", | |
| "42": "Left-AnG---angular-gyrus", | |
| "43": "Right-Calc--calcarine-cortex", | |
| "44": "Left-Calc--calcarine-cortex", | |
| "45": "Right-CO----central-operculum", | |
| "46": "Left-CO----central-operculum", | |
| "47": "Right-Cun---cuneus", | |
| "48": "Left-Cun---cuneus", | |
| "49": "Right-Ent---entorhinal-area", | |
| "50": "Left-Ent---entorhinal-area", | |
| "51": "Right-FO----frontal-operculum", | |
| "52": "Left-FO----frontal-operculum", | |
| "53": "Right-FRP---frontal-pole", | |
| "54": "Left-FRP---frontal-pole", | |
| "55": "Right-FuG---fusiform-gyrus ", | |
| "56": "Left-FuG---fusiform-gyrus", | |
| "57": "Right-GRe---gyrus-rectus", | |
| "58": "Left-GRe---gyrus-rectus", | |
| "59": "Right-IOG---inferior-occipital-gyrus", | |
| "60": "Left-IOG---inferior-occipital-gyrus", | |
| "61": "Right-ITG---inferior-temporal-gyrus", | |
| "62": "Left-ITG---inferior-temporal-gyrus", | |
| "63": "Right-LiG---lingual-gyrus", | |
| "64": "Left-LiG---lingual-gyrus", | |
| "65": "Right-LOrG--lateral-orbital-gyrus", | |
| "66": "Left-LOrG--lateral-orbital-gyrus", | |
| "67": "Right-MCgG--middle-cingulate-gyrus", | |
| "68": "Left-MCgG--middle-cingulate-gyrus", | |
| "69": "Right-MFC---medial-frontal-cortex", | |
| "70": "Left-MFC---medial-frontal-cortex", | |
| "71": "Right-MFG---middle-frontal-gyrus", | |
| "72": "Left-MFG---middle-frontal-gyrus", | |
| "73": "Right-MOG---middle-occipital-gyrus", | |
| "74": "Left-MOG---middle-occipital-gyrus", | |
| "75": "Right-MOrG--medial-orbital-gyrus", | |
| "76": "Left-MOrG--medial-orbital-gyrus", | |
| "77": "Right-MPoG--postcentral-gyrus", | |
| "78": "Left-MPoG--postcentral-gyrus", | |
| "79": "Right-MPrG--precentral-gyrus", | |
| "80": "Left-MPrG--precentral-gyrus", | |
| "81": "Right-MSFG--superior-frontal-gyrus", | |
| "82": "Left-MSFG--superior-frontal-gyrus", | |
| "83": "Right-MTG---middle-temporal-gyrus", | |
| "84": "Left-MTG---middle-temporal-gyrus", | |
| "85": "Right-OCP---occipital-pole", | |
| "86": "Left-OCP---occipital-pole", | |
| "87": "Right-OFuG--occipital-fusiform-gyrus", | |
| "88": "Left-OFuG--occipital-fusiform-gyrus", | |
| "89": "Right-OpIFG-opercular-part-of-the-IFG", | |
| "90": "Left-OpIFG-opercular-part-of-the-IFG", | |
| "91": "Right-OrIFG-orbital-part-of-the-IFG", | |
| "92": "Left-OrIFG-orbital-part-of-the-IFG", | |
| "93": "Right-PCgG--posterior-cingulate-gyrus", | |
| "94": "Left-PCgG--posterior-cingulate-gyrus", | |
| "95": "Right-PCu---precuneus", | |
| "96": "Left-PCu---precuneus", | |
| "97": "Right-PHG---parahippocampal-gyrus", | |
| "98": "Left-PHG---parahippocampal-gyrus", | |
| "99": "Right-PIns--posterior-insula", | |
| "100": "Left-PIns--posterior-insula", | |
| "101": "Right-PO----parietal-operculum", | |
| "102": "Left-PO----parietal-operculum", | |
| "103": "Right-PoG---postcentral-gyrus", | |
| "104": "Left-PoG---postcentral-gyrus", | |
| "105": "Right-POrG--posterior-orbital-gyrus", | |
| "106": "Left-POrG--posterior-orbital-gyrus", | |
| "107": "Right-PP----planum-polare", | |
| "108": "Left-PP----planum-polare", | |
| "109": "Right-PrG---precentral-gyrus", | |
| "110": "Left-PrG---precentral-gyrus", | |
| "111": "Right-PT----planum-temporale", | |
| "112": "Left-PT----planum-temporale", | |
| "113": "Right-SCA---subcallosal-area", | |
| "114": "Left-SCA---subcallosal-area", | |
| "115": "Right-SFG---superior-frontal-gyrus", | |
| "116": "Left-SFG---superior-frontal-gyrus", | |
| "117": "Right-SMC---supplementary-motor-cortex", | |
| "118": "Left-SMC---supplementary-motor-cortex", | |
| "119": "Right-SMG---supramarginal-gyrus", | |
| "120": "Left-SMG---supramarginal-gyrus", | |
| "121": "Right-SOG---superior-occipital-gyrus", | |
| "122": "Left-SOG---superior-occipital-gyrus", | |
| "123": "Right-SPL---superior-parietal-lobule", | |
| "124": "Left-SPL---superior-parietal-lobule", | |
| "125": "Right-STG---superior-temporal-gyrus", | |
| "126": "Left-STG---superior-temporal-gyrus", | |
| "127": "Right-TMP---temporal-pole", | |
| "128": "Left-TMP---temporal-pole", | |
| "129": "Right-TrIFG-triangular-part-of-the-IFG", | |
| "130": "Left-TrIFG-triangular-part-of-the-IFG", | |
| "131": "Right-TTG---transverse-temporal-gyrus", | |
| "132": "Left-TTG---transverse-temporal-gyrus" | |
| } | |
| } | |
| } | |
| } | |
| } | |