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  1. .gitattributes +1 -0
  2. .gitignore +129 -0
  3. MANIFEST.in +3 -0
  4. README.md +13 -0
  5. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/dp_mean.csv +1 -0
  6. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/dp_std.csv +1 -0
  7. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_0.pt +3 -0
  8. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_1.pt +3 -0
  9. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_10.pt +3 -0
  10. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_11.pt +3 -0
  11. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_12.pt +3 -0
  12. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_13.pt +3 -0
  13. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_14.pt +3 -0
  14. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_15.pt +3 -0
  15. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_16.pt +3 -0
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  17. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_18.pt +3 -0
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  19. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_2.pt +3 -0
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  21. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_4.pt +3 -0
  22. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_5.pt +3 -0
  23. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_6.pt +3 -0
  24. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_7.pt +3 -0
  25. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_8.pt +3 -0
  26. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/final_model_9.pt +3 -0
  27. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/mean.csv +24 -0
  28. genet_models/DeepPrime/DP_variant_293T_NRCH-PE2max_Opti_220815/std.csv +24 -0
  29. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/dp_mean.csv +1 -0
  30. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/dp_std.csv +1 -0
  31. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_0.pt +3 -0
  32. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_1.pt +3 -0
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  37. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_14.pt +3 -0
  38. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_15.pt +3 -0
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  41. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_18.pt +3 -0
  42. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_19.pt +3 -0
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  44. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_3.pt +3 -0
  45. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_4.pt +3 -0
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  48. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_7.pt +3 -0
  49. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_8.pt +3 -0
  50. genet_models/DeepPrime/DP_variant_293T_NRCH_PE2_Opti_220428/final_model_9.pt +3 -0
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MANIFEST.in ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ include README.md
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+ include genet-models/DeepPrime_FT/*
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+
README.md ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # genet-models
2
+ prediction models for genet
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+
4
+ # Available models
5
+ The DeepSpCas9 model predicts the activity of SpCas9. It is based on the model presented in the 2019 Sci.Adv. publication.
6
+
7
+ # DeepSpCas9-variants
8
+ The DeepSpCas9-variants model predicts the activity of various SpCas9 PAM variants.
9
+
10
+ # DeepPrime / DeepPrime-FT
11
+ These models predict the efficiency of Prime editing. They are based on the models from the 2023 Cell paper.
12
+
13
+ Original author: Goosang-Yu ~ https://github.com/Goosang-Yu/genet-models
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+ PBSlen,9.760297795390713
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