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tabula_sapiens_Bladder

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Bladder
Model card Files Community
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@@ -32,55 +32,55 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | bladder urothelial cell | 2706 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |
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- | fibroblast | 1417 | 0.96 | 0.97 | 0.97 | 0.96 | 0.00 | 0.93 | 0.96 | 0.96 | 0.97 |
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- | monocyte | 506 | 0.88 | 0.92 | 0.94 | 0.94 | 0.00 | 0.91 | 0.90 | 0.92 | 0.95 |
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- | CD8-positive, alpha-beta T cell | 436 | 0.85 | 0.88 | 0.88 | 0.73 | 0.00 | 0.84 | 0.83 | 0.88 | 0.90 |
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- | macrophage | 323 | 0.85 | 0.89 | 0.92 | 0.92 | 0.00 | 0.91 | 0.88 | 0.89 | 0.93 |
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- | myofibroblast cell | 315 | 0.85 | 0.91 | 0.92 | 0.90 | 0.00 | 0.78 | 0.87 | 0.86 | 0.90 |
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- | CD4-positive, alpha-beta T cell | 215 | 0.68 | 0.73 | 0.77 | 0.47 | 0.00 | 0.70 | 0.78 | 0.86 | 0.84 |
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- | mast cell | 170 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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- | plasma cell | 108 | 0.94 | 0.96 | 0.97 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.97 |
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- | pericyte | 112 | 0.95 | 0.96 | 0.95 | 0.95 | 0.00 | 0.94 | 0.92 | 0.94 | 0.95 |
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- | smooth muscle cell | 96 | 0.96 | 0.95 | 0.95 | 0.96 | 0.00 | 0.94 | 0.95 | 0.91 | 0.95 |
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- | T cell | 62 | 0.40 | 0.11 | 0.36 | 0.12 | 0.00 | 0.44 | 0.38 | 0.49 | 0.54 |
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- | B cell | 44 | 0.93 | 0.96 | 0.97 | 0.96 | 0.00 | 0.92 | 0.94 | 0.91 | 0.96 |
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- | vein endothelial cell | 38 | 0.75 | 0.83 | 0.81 | 0.80 | 0.00 | 0.88 | 0.89 | 0.89 | 0.86 |
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- | neutrophil | 20 | 1.00 | 0.98 | 1.00 | 0.80 | 0.00 | 0.82 | 0.88 | 0.89 | 0.98 |
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- | natural killer cell | 18 | 0.59 | 0.44 | 0.58 | 0.58 | 0.00 | 0.58 | 0.58 | 0.59 | 0.61 |
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- | endothelial cell of lymphatic vessel | 14 | 0.90 | 0.92 | 0.96 | 0.52 | 0.00 | 0.93 | 0.96 | 0.97 | 0.96 |
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- | capillary endothelial cell | 14 | 0.00 | 0.55 | 0.57 | 0.55 | 0.00 | 0.81 | 0.75 | 0.64 | 0.60 |
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- | erythrocyte | 10 | 0.80 | 0.43 | 0.90 | 0.46 | 0.00 | 0.15 | 0.95 | 0.77 | 0.95 |
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- | mature NK T cell | 7 | 0.67 | 0.60 | 0.47 | 0.20 | 0.00 | 0.60 | 0.62 | 0.56 | 0.71 |
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- | endothelial cell | 4 | 0.00 | 0.00 | 0.33 | 0.50 | 0.00 | 0.44 | 0.40 | 0.40 | 0.67 |
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- | regulatory T cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 0.40 | 0.67 | 0.00 |
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  The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | bladder urothelial cell | 24535 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |
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- | fibroblast | 12349 | 0.96 | 0.96 | 0.98 | 0.97 | 0.00 | 0.93 | 0.96 | 0.96 | 0.97 |
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- | monocyte | 4349 | 0.88 | 0.91 | 0.95 | 0.95 | 0.00 | 0.91 | 0.91 | 0.91 | 0.95 |
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- | CD8-positive, alpha-beta T cell | 3996 | 0.86 | 0.88 | 0.92 | 0.81 | 0.00 | 0.88 | 0.88 | 0.92 | 0.92 |
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- | macrophage | 2829 | 0.84 | 0.87 | 0.93 | 0.93 | 0.00 | 0.90 | 0.88 | 0.88 | 0.93 |
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- | myofibroblast cell | 2821 | 0.86 | 0.91 | 0.94 | 0.93 | 0.00 | 0.80 | 0.89 | 0.89 | 0.92 |
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- | CD4-positive, alpha-beta T cell | 1974 | 0.66 | 0.70 | 0.80 | 0.62 | 0.00 | 0.72 | 0.81 | 0.89 | 0.86 |
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- | mast cell | 1398 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |
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- | plasma cell | 1097 | 0.96 | 0.96 | 0.98 | 0.99 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |
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- | pericyte | 1072 | 0.96 | 0.96 | 0.97 | 0.96 | 0.00 | 0.95 | 0.96 | 0.97 | 0.97 |
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- | smooth muscle cell | 957 | 0.95 | 0.96 | 0.98 | 0.97 | 0.00 | 0.95 | 0.96 | 0.95 | 0.97 |
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- | T cell | 719 | 0.45 | 0.03 | 0.59 | 0.40 | 0.00 | 0.58 | 0.62 | 0.70 | 0.74 |
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- | B cell | 440 | 0.94 | 0.95 | 0.95 | 0.96 | 0.00 | 0.94 | 0.96 | 0.98 | 0.97 |
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- | vein endothelial cell | 400 | 0.82 | 0.86 | 0.91 | 0.84 | 0.00 | 0.94 | 0.96 | 0.97 | 0.94 |
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- | neutrophil | 221 | 0.95 | 0.96 | 0.97 | 0.88 | 0.00 | 0.86 | 0.94 | 0.87 | 0.96 |
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- | natural killer cell | 147 | 0.59 | 0.30 | 0.74 | 0.58 | 0.00 | 0.68 | 0.75 | 0.77 | 0.79 |
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- | endothelial cell of lymphatic vessel | 113 | 0.89 | 0.88 | 0.92 | 0.65 | 0.00 | 0.96 | 0.99 | 0.99 | 0.96 |
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- | capillary endothelial cell | 93 | 0.00 | 0.47 | 0.71 | 0.63 | 0.00 | 0.84 | 0.98 | 0.99 | 0.91 |
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- | erythrocyte | 96 | 0.83 | 0.34 | 0.97 | 0.87 | 0.00 | 0.15 | 0.96 | 0.80 | 0.98 |
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- | mature NK T cell | 88 | 0.54 | 0.32 | 0.72 | 0.34 | 0.00 | 0.77 | 0.91 | 0.93 | 0.92 |
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- | endothelial cell | 33 | 0.00 | 0.00 | 0.34 | 0.52 | 0.00 | 0.67 | 0.97 | 0.99 | 0.86 |
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- | regulatory T cell | 19 | 0.00 | 0.00 | 0.10 | 0.00 | 0.00 | 0.75 | 0.86 | 0.78 | 0.69 |
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  </details>
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | bladder urothelial cell | 2777 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |
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+ | fibroblast | 1364 | 0.96 | 0.97 | 0.98 | 0.96 | 0.00 | 0.95 | 0.95 | 0.95 | 0.97 |
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+ | monocyte | 456 | 0.88 | 0.91 | 0.91 | 0.91 | 0.00 | 0.91 | 0.90 | 0.90 | 0.93 |
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+ | CD8-positive, alpha-beta T cell | 409 | 0.86 | 0.88 | 0.88 | 0.76 | 0.00 | 0.86 | 0.88 | 0.90 | 0.91 |
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+ | macrophage | 329 | 0.86 | 0.89 | 0.91 | 0.90 | 0.00 | 0.90 | 0.88 | 0.88 | 0.91 |
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+ | myofibroblast cell | 302 | 0.87 | 0.92 | 0.94 | 0.91 | 0.00 | 0.87 | 0.88 | 0.86 | 0.92 |
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+ | CD4-positive, alpha-beta T cell | 237 | 0.71 | 0.75 | 0.74 | 0.55 | 0.00 | 0.68 | 0.79 | 0.86 | 0.83 |
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+ | mast cell | 159 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
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+ | plasma cell | 133 | 0.95 | 0.96 | 0.98 | 0.99 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |
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+ | pericyte | 108 | 0.95 | 0.95 | 0.94 | 0.96 | 0.00 | 0.95 | 0.95 | 0.91 | 0.96 |
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+ | smooth muscle cell | 109 | 0.93 | 0.97 | 0.97 | 0.96 | 0.00 | 0.94 | 0.96 | 0.94 | 0.96 |
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+ | T cell | 73 | 0.48 | 0.14 | 0.46 | 0.13 | 0.00 | 0.42 | 0.53 | 0.59 | 0.60 |
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+ | B cell | 51 | 0.99 | 0.99 | 0.94 | 0.99 | 0.00 | 0.94 | 0.91 | 0.94 | 0.98 |
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+ | vein endothelial cell | 41 | 0.80 | 0.86 | 0.87 | 0.77 | 0.00 | 0.92 | 0.87 | 0.89 | 0.89 |
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+ | neutrophil | 26 | 0.88 | 0.98 | 0.96 | 0.77 | 0.00 | 0.81 | 0.93 | 0.87 | 0.93 |
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+ | natural killer cell | 13 | 0.57 | 0.33 | 0.57 | 0.10 | 0.00 | 0.46 | 0.59 | 0.63 | 0.72 |
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+ | endothelial cell of lymphatic vessel | 13 | 0.89 | 0.92 | 0.92 | 0.50 | 0.00 | 0.80 | 0.92 | 0.89 | 0.92 |
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+ | capillary endothelial cell | 8 | 0.00 | 0.46 | 0.67 | 0.50 | 0.00 | 0.60 | 0.82 | 0.94 | 0.86 |
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+ | erythrocyte | 9 | 0.89 | 0.35 | 1.00 | 0.36 | 0.00 | 0.08 | 0.95 | 0.72 | 1.00 |
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+ | mature NK T cell | 13 | 0.67 | 0.38 | 0.70 | 0.25 | 0.00 | 0.56 | 0.69 | 0.80 | 0.88 |
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+ | endothelial cell | 4 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.50 | 0.29 | 0.00 | 0.40 |
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+ | regulatory T cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | bladder urothelial cell | 24464 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |
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+ | fibroblast | 12402 | 0.95 | 0.96 | 0.98 | 0.97 | 0.00 | 0.95 | 0.96 | 0.95 | 0.97 |
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+ | monocyte | 4399 | 0.89 | 0.91 | 0.95 | 0.95 | 0.00 | 0.91 | 0.91 | 0.92 | 0.95 |
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+ | CD8-positive, alpha-beta T cell | 4023 | 0.86 | 0.88 | 0.92 | 0.85 | 0.00 | 0.86 | 0.89 | 0.92 | 0.92 |
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+ | macrophage | 2823 | 0.84 | 0.87 | 0.93 | 0.92 | 0.00 | 0.88 | 0.88 | 0.89 | 0.92 |
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+ | myofibroblast cell | 2834 | 0.86 | 0.90 | 0.94 | 0.93 | 0.00 | 0.87 | 0.89 | 0.87 | 0.92 |
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+ | CD4-positive, alpha-beta T cell | 1952 | 0.70 | 0.72 | 0.80 | 0.67 | 0.00 | 0.73 | 0.82 | 0.89 | 0.85 |
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+ | mast cell | 1409 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.97 | 0.99 |
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+ | plasma cell | 1072 | 0.95 | 0.96 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
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+ | pericyte | 1076 | 0.96 | 0.96 | 0.97 | 0.97 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |
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+ | smooth muscle cell | 944 | 0.94 | 0.96 | 0.98 | 0.97 | 0.00 | 0.94 | 0.97 | 0.95 | 0.97 |
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+ | T cell | 708 | 0.45 | 0.08 | 0.58 | 0.30 | 0.00 | 0.52 | 0.64 | 0.70 | 0.72 |
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+ | B cell | 433 | 0.94 | 0.94 | 0.95 | 0.95 | 0.00 | 0.92 | 0.95 | 0.97 | 0.97 |
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+ | vein endothelial cell | 397 | 0.81 | 0.87 | 0.91 | 0.86 | 0.00 | 0.95 | 0.97 | 0.98 | 0.95 |
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+ | neutrophil | 215 | 0.88 | 0.97 | 0.97 | 0.84 | 0.00 | 0.80 | 0.98 | 0.89 | 0.94 |
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+ | natural killer cell | 152 | 0.60 | 0.21 | 0.71 | 0.45 | 0.00 | 0.62 | 0.77 | 0.75 | 0.80 |
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+ | endothelial cell of lymphatic vessel | 114 | 0.89 | 0.90 | 0.91 | 0.58 | 0.00 | 0.95 | 0.97 | 0.99 | 0.98 |
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+ | capillary endothelial cell | 99 | 0.00 | 0.50 | 0.74 | 0.64 | 0.00 | 0.80 | 0.95 | 0.99 | 0.93 |
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+ | erythrocyte | 97 | 0.87 | 0.33 | 0.97 | 0.80 | 0.00 | 0.09 | 0.92 | 0.77 | 0.93 |
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+ | mature NK T cell | 82 | 0.52 | 0.32 | 0.70 | 0.33 | 0.00 | 0.61 | 0.85 | 0.86 | 0.88 |
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+ | endothelial cell | 33 | 0.00 | 0.00 | 0.36 | 0.51 | 0.00 | 0.80 | 0.97 | 0.97 | 0.92 |
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+ | regulatory T cell | 18 | 0.00 | 0.00 | 0.11 | 0.00 | 0.00 | 0.72 | 0.90 | 0.92 | 0.43 |
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  </details>
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