Upload folder using huggingface_hub

.gitattributes

@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e135839975d545a03fdbb6a69760c1cafec9b19eb19e29a79eb32b3effc2e187
+size 27239224

OnClass.npz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5809ad1dddeae74ffb03909a0d893fdfa6d3a219908aa356e0da3a9efee4470e
+size 144112148

accuracies.json

@@ -0,0 +1,4 @@
+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| bladder urothelial cell | 2809 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.88 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 1324 | 0.96 | 0.97 | 0.98 | 0.96 | 0.00 | 0.94 | 0.96 | 0.96 | 0.97 |\n| monocyte | 465 | 0.87 | 0.90 | 0.91 | 0.91 | 0.00 | 0.89 | 0.88 | 0.90 | 0.92 |\n| CD8-positive, alpha-beta T cell | 406 | 0.86 | 0.87 | 0.89 | 0.77 | 0.00 | 0.88 | 0.87 | 0.90 | 0.91 |\n| macrophage | 341 | 0.85 | 0.88 | 0.90 | 0.90 | 0.00 | 0.91 | 0.86 | 0.89 | 0.91 |\n| myofibroblast cell | 299 | 0.86 | 0.93 | 0.94 | 0.91 | 0.00 | 0.84 | 0.90 | 0.88 | 0.92 |\n| CD4-positive, alpha-beta T cell | 239 | 0.73 | 0.74 | 0.75 | 0.58 | 0.00 | 0.70 | 0.81 | 0.86 | 0.83 |\n| mast cell | 159 | 0.99 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| plasma cell | 132 | 0.94 | 0.96 | 0.98 | 0.97 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| pericyte | 109 | 0.96 | 0.95 | 0.93 | 0.96 | 0.00 | 0.97 | 0.93 | 0.94 | 0.95 |\n| smooth muscle cell | 111 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.94 | 0.97 |\n| T cell | 75 | 0.47 | 0.12 | 0.41 | 0.21 | 0.00 | 0.43 | 0.49 | 0.57 | 0.54 |\n| B cell | 43 | 0.99 | 0.99 | 0.96 | 0.99 | 0.00 | 0.95 | 0.97 | 0.94 | 0.99 |\n| vein endothelial cell | 42 | 0.82 | 0.87 | 0.87 | 0.72 | 0.00 | 0.77 | 0.89 | 0.86 | 0.89 |\n| neutrophil | 21 | 0.88 | 0.98 | 0.95 | 0.93 | 0.00 | 0.93 | 0.87 | 0.88 | 0.89 |\n| natural killer cell | 17 | 0.69 | 0.29 | 0.65 | 0.17 | 0.00 | 0.60 | 0.65 | 0.79 | 0.76 |\n| endothelial cell of lymphatic vessel | 13 | 0.89 | 0.88 | 0.78 | 0.56 | 0.00 | 0.85 | 0.92 | 0.81 | 0.92 |\n| capillary endothelial cell | 7 | 0.36 | 0.50 | 0.59 | 0.44 | 0.00 | 0.23 | 0.80 | 0.80 | 0.80 |\n| erythrocyte | 8 | 0.76 | 0.25 | 0.82 | 0.40 | 0.00 | 0.03 | 0.84 | 0.64 | 0.84 |\n| mature NK T cell | 11 | 0.71 | 0.43 | 0.70 | 0.71 | 0.00 | 0.55 | 0.82 | 0.78 | 0.90 |\n| endothelial cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 |\n| regulatory T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.40 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| bladder urothelial cell | 24432 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.89 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 12442 | 0.95 | 0.96 | 0.98 | 0.98 | 0.00 | 0.94 | 0.96 | 0.95 | 0.97 |\n| monocyte | 4390 | 0.90 | 0.91 | 0.95 | 0.95 | 0.00 | 0.91 | 0.91 | 0.92 | 0.95 |\n| CD8-positive, alpha-beta T cell | 4026 | 0.86 | 0.88 | 0.92 | 0.86 | 0.00 | 0.89 | 0.88 | 0.92 | 0.92 |\n| macrophage | 2811 | 0.84 | 0.87 | 0.93 | 0.93 | 0.00 | 0.90 | 0.88 | 0.89 | 0.92 |\n| myofibroblast cell | 2837 | 0.85 | 0.91 | 0.94 | 0.93 | 0.00 | 0.83 | 0.88 | 0.87 | 0.92 |\n| CD4-positive, alpha-beta T cell | 1950 | 0.68 | 0.71 | 0.80 | 0.68 | 0.00 | 0.72 | 0.83 | 0.89 | 0.85 |\n| mast cell | 1409 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.96 | 0.99 |\n| plasma cell | 1073 | 0.95 | 0.96 | 0.98 | 0.98 | 0.00 | 0.97 | 0.99 | 0.98 | 0.98 |\n| pericyte | 1075 | 0.96 | 0.96 | 0.97 | 0.97 | 0.00 | 0.97 | 0.97 | 0.97 | 0.97 |\n| smooth muscle cell | 942 | 0.95 | 0.96 | 0.98 | 0.97 | 0.00 | 0.97 | 0.96 | 0.95 | 0.96 |\n| T cell | 706 | 0.45 | 0.07 | 0.58 | 0.36 | 0.00 | 0.52 | 0.62 | 0.68 | 0.71 |\n| B cell | 441 | 0.93 | 0.94 | 0.95 | 0.96 | 0.00 | 0.93 | 0.95 | 0.96 | 0.96 |\n| vein endothelial cell | 396 | 0.84 | 0.86 | 0.90 | 0.85 | 0.00 | 0.90 | 0.97 | 0.97 | 0.94 |\n| neutrophil | 220 | 0.95 | 0.96 | 0.97 | 0.96 | 0.00 | 0.92 | 0.97 | 0.92 | 0.96 |\n| natural killer cell | 148 | 0.59 | 0.26 | 0.70 | 0.45 | 0.00 | 0.61 | 0.78 | 0.75 | 0.80 |\n| endothelial cell of lymphatic vessel | 114 | 0.88 | 0.90 | 0.92 | 0.69 | 0.00 | 0.95 | 0.97 | 0.97 | 0.95 |\n| capillary endothelial cell | 100 | 0.35 | 0.48 | 0.70 | 0.65 | 0.00 | 0.37 | 0.99 | 1.00 | 0.90 |\n| erythrocyte | 98 | 0.83 | 0.35 | 0.97 | 0.83 | 0.00 | 0.05 | 0.92 | 0.72 | 0.97 |\n| mature NK T cell | 84 | 0.54 | 0.33 | 0.74 | 0.42 | 0.00 | 0.67 | 0.90 | 0.90 | 0.91 |\n| endothelial cell | 31 | 0.00 | 0.00 | 0.37 | 0.61 | 0.00 | 0.74 | 0.98 | 0.95 | 0.83 |\n| regulatory T cell | 21 | 0.00 | 0.00 | 0.17 | 0.00 | 0.00 | 0.11 | 0.98 | 0.74 | 0.69 |"
+}

celltypist.pkl

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:237d12e1451ae4ce2d4c9830d27ac14604b4a387e10b1a948dfe4c58b0e58917
+size 521708

checkpoint

@@ -0,0 +1,2 @@
+model_checkpoint_path: "OnClass"
+all_model_checkpoint_paths: "OnClass"

harmony_knn_classifier.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:eedd6e4fc935239dcde409e1b87af111ad1af2682451155ffd90ef6f59532c3a
+size 45776741

obo_dag.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:88b6c19fc939f3c304978a10ef8b7cc6ba69d2d4a0a0613df8312b4ee3a26313
+size 321386

pynndescent_index.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8569a383c3c441cc7100a280077212d60b1ef51255118af78bed64ae8a0daab1
+size 48724865

scanvi/model.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:947d9cf36822054c068177deb3d5374cacf57310a93229c604e79fb9a8a3c006
+size 11967020

scvi/model.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:effa2851912609c240ae58c17b76ab35a54851df21bfae1b754f656b68775fd6
+size 11404093

scvi_knn_classifier.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c4f3040583c5fe3f21674ff4677128132a2e400db8df50d0c862377dcdbc3787
+size 26020117

svm_classifier_cuml.joblib

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:43e0b0aab9247a9dd08eccb79784373b7628fc2c2f63178d59a689a163a272a2
+size 376507

xgboost_classifier.model

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:187382d064ceb4de1e1ba6ff5599016e21136a73f7119e9783d6f3a5f0fd0ce3
+size 5816247