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Browse files- .gitattributes +1 -0
- OnClass.data-00000-of-00001 +3 -0
- OnClass.index +0 -0
- OnClass.meta +0 -0
- OnClass.npz +3 -0
- accuracies.json +4 -0
- celltypist.pkl +3 -0
- checkpoint +2 -0
- harmony_knn_classifier.joblib +3 -0
- obo_dag.joblib +3 -0
- popv_output/predictions.csv +0 -0
- preprocessing.json +0 -0
- pynndescent_index.joblib +3 -0
- scanvi/model.pt +3 -0
- scvi/model.pt +3 -0
- scvi_knn_classifier.joblib +3 -0
- svm_classifier_cuml.joblib +3 -0
- xgboost_classifier.model +3 -0
.gitattributes
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OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
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OnClass.data-00000-of-00001
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version https://git-lfs.github.com/spec/v1
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oid sha256:eff3340d945a8f32c8bc6a1fd34e0df5ff566f737693534eb2b8f6a49d32046d
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size 27239224
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OnClass.index
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OnClass.meta
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OnClass.npz
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version https://git-lfs.github.com/spec/v1
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accuracies.json
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"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 3353 | 0.88 | 0.79 | 0.88 | 0.72 | 0.00 | 0.68 | 0.86 | 0.86 | 0.93 |\n| bladder urothelial cell | 2724 | 0.98 | 0.92 | 0.91 | 0.64 | 0.00 | 0.15 | 1.00 | 0.99 | 0.99 |\n| luminal epithelial cell of mammary gland | 1512 | 0.98 | 0.19 | 0.97 | 0.67 | 0.00 | 0.31 | 0.99 | 0.98 | 0.99 |\n| enterocyte of epithelium proper of duodenum | 1367 | 0.92 | 0.56 | 0.80 | 0.48 | 0.00 | 0.02 | 0.91 | 0.89 | 0.94 |\n| stratified squamous epithelial cell | 1194 | 0.82 | 0.80 | 0.89 | 0.70 | 0.00 | 0.50 | 0.84 | 0.84 | 0.89 |\n| acinar cell of salivary gland | 1195 | 0.93 | 0.81 | 0.90 | 0.49 | 0.00 | 0.03 | 0.95 | 0.93 | 0.96 |\n| pulmonary alveolar type 2 cell | 1182 | 0.97 | 0.97 | 0.96 | 0.77 | 0.00 | 0.43 | 0.97 | 0.96 | 0.98 |\n| conjunctival epithelial cell | 1138 | 0.90 | 0.71 | 0.83 | 0.38 | 0.00 | 0.36 | 0.95 | 0.92 | 0.96 |\n| luminal cell of prostate epithelium | 1085 | 0.92 | 0.77 | 0.92 | 0.62 | 0.00 | 0.16 | 0.96 | 0.95 | 0.97 |\n| kidney epithelial cell | 937 | 0.99 | 0.87 | 0.92 | 0.36 | 0.00 | 0.11 | 0.99 | 1.00 | 1.00 |\n| hepatocyte | 737 | 0.99 | 1.00 | 0.97 | 0.60 | 0.00 | 0.41 | 1.00 | 0.99 | 1.00 |\n| enterocyte of epithelium proper of ileum | 677 | 0.97 | 0.17 | 0.84 | 0.32 | 0.00 | 0.12 | 0.98 | 0.98 | 0.98 |\n| pancreatic acinar cell | 528 | 0.95 | 0.66 | 0.93 | 0.49 | 0.00 | 0.01 | 0.97 | 0.96 | 0.97 |\n| enterocyte of epithelium of large intestine | 459 | 0.80 | 0.35 | 0.56 | 0.32 | 0.00 | 0.17 | 0.83 | 0.85 | 0.81 |\n| corneal epithelial cell | 425 | 0.91 | 0.00 | 0.94 | 0.69 | 0.00 | 0.59 | 0.96 | 0.94 | 0.97 |\n| duct epithelial cell | 356 | 0.77 | 0.58 | 0.77 | 0.45 | 0.00 | 0.34 | 0.82 | 0.77 | 0.87 |\n| basal cell of prostate epithelium | 325 | 0.71 | 0.04 | 0.87 | 0.50 | 0.00 | 0.42 | 0.87 | 0.85 | 0.88 |\n| pulmonary alveolar type 1 cell | 297 | 0.96 | 0.96 | 0.96 | 0.76 | 0.00 | 0.81 | 0.96 | 0.94 | 0.98 |\n| pancreatic ductal cell | 263 | 0.87 | 0.16 | 0.85 | 0.66 | 0.00 | 0.16 | 0.93 | 0.92 | 0.93 |\n| small intestine goblet cell | 198 | 0.87 | 0.82 | 0.91 | 0.65 | 0.00 | 0.18 | 0.92 | 0.92 | 0.91 |\n| paneth cell of epithelium of small intestine | 199 | 0.69 | 0.57 | 0.71 | 0.24 | 0.00 | 0.20 | 0.65 | 0.68 | 0.79 |\n| club cell | 192 | 0.77 | 0.75 | 0.84 | 0.53 | 0.00 | 0.68 | 0.82 | 0.78 | 0.86 |\n| intestinal crypt stem cell of colon | 178 | 0.77 | 0.57 | 0.62 | 0.39 | 0.00 | 0.26 | 0.79 | 0.83 | 0.84 |\n| progenitor cell of mammary luminal epithelium | 182 | 0.99 | 0.00 | 0.98 | 0.97 | 0.00 | 0.97 | 0.93 | 0.96 | 0.99 |\n| epithelial cell | 158 | 0.98 | 0.88 | 0.85 | 0.24 | 0.00 | 0.12 | 0.99 | 0.98 | 0.98 |\n| large intestine goblet cell | 162 | 0.89 | 0.76 | 0.77 | 0.41 | 0.00 | 0.43 | 0.93 | 0.90 | 0.89 |\n| enterocyte of epithelium proper of small intestine | 148 | 0.54 | 0.00 | 0.30 | 0.13 | 0.00 | 0.14 | 0.68 | 0.68 | 0.73 |\n| epithelial cell of uterus | 141 | 0.96 | 0.49 | 0.79 | 0.30 | 0.00 | 0.12 | 0.99 | 0.94 | 0.98 |\n| acinar cell | 140 | 0.85 | 0.43 | 0.52 | 0.51 | 0.00 | 0.29 | 0.95 | 0.94 | 0.95 |\n| lung ciliated cell | 111 | 0.72 | 0.46 | 0.83 | 0.71 | 0.00 | 0.83 | 0.95 | 0.93 | 0.92 |\n| respiratory goblet cell | 109 | 0.55 | 0.43 | 0.75 | 0.51 | 0.00 | 0.31 | 0.61 | 0.66 | 0.77 |\n| salivary gland cell | 79 | 0.60 | 0.02 | 0.90 | 0.52 | 0.00 | 0.32 | 0.68 | 0.73 | 0.88 |\n| ciliated columnar cell of tracheobronchial tree | 60 | 0.52 | 0.30 | 0.78 | 0.43 | 0.00 | 0.65 | 0.90 | 0.87 | 0.88 |\n| intrahepatic cholangiocyte | 59 | 0.96 | 0.22 | 0.67 | 0.39 | 0.00 | 0.19 | 1.00 | 0.95 | 0.97 |\n| blood vessel smooth muscle cell | 66 | 0.94 | 0.50 | 0.90 | 0.80 | 0.00 | 0.37 | 0.99 | 0.99 | 1.00 |\n| intestinal crypt stem cell of small intestine | 42 | 0.00 | 0.30 | 0.32 | 0.15 | 0.00 | 0.17 | 0.29 | 0.37 | 0.44 |\n| myoepithelial cell | 44 | 0.22 | 0.32 | 0.87 | 0.72 | 0.00 | 0.49 | 0.72 | 0.58 | 0.87 |\n| intestinal tuft cell | 34 | 0.73 | 0.81 | 0.88 | 0.80 | 0.00 | 0.06 | 0.99 | 0.94 | 0.87 |\n| enterocyte of epithelium proper of jejunum | 49 | 0.10 | 0.00 | 0.38 | 0.19 | 0.00 | 0.02 | 0.51 | 0.42 | 0.59 |\n| serous cell of epithelium of trachea | 27 | 0.56 | 0.00 | 0.07 | 0.27 | 0.00 | 0.10 | 0.41 | 0.47 | 0.79 |\n| mesothelial cell | 31 | 0.82 | 0.80 | 0.63 | 0.82 | 0.00 | 0.75 | 1.00 | 0.95 | 0.91 |\n| ciliated epithelial cell | 27 | 0.91 | 0.00 | 0.54 | 0.47 | 0.00 | 0.46 | 0.96 | 0.86 | 0.94 |\n| mucus secreting cell | 33 | 0.62 | 0.19 | 0.68 | 0.41 | 0.00 | 0.13 | 0.69 | 0.77 | 0.77 |\n| supporting cell of vestibular epithelium | 27 | 0.90 | 0.00 | 0.69 | 0.84 | 0.00 | 0.33 | 1.00 | 0.90 | 0.98 |\n| enteroendocrine cell of small intestine | 32 | 0.51 | 0.46 | 0.79 | 0.59 | 0.00 | 0.69 | 0.87 | 0.67 | 0.75 |\n| transit amplifying cell of colon | 22 | 0.38 | 0.06 | 0.06 | 0.38 | 0.00 | 0.12 | 0.49 | 0.44 | 0.62 |\n| ovarian surface epithelial cell | 14 | 0.00 | 0.00 | 0.67 | 0.44 | 0.00 | 0.24 | 0.97 | 0.90 | 0.73 |\n| tracheal goblet cell | 24 | 0.00 | 0.16 | 0.60 | 0.67 | 0.00 | 0.40 | 0.75 | 0.68 | 0.86 |\n| paneth cell of colon | 17 | 0.00 | 0.08 | 0.56 | 0.52 | 0.00 | 0.15 | 0.50 | 0.32 | 0.62 |\n| glandular epithelial cell | 14 | 0.62 | 0.14 | 0.33 | 0.36 | 0.00 | 0.49 | 0.96 | 0.71 | 0.88 |\n| tuft cell of colon | 19 | 0.00 | 0.31 | 0.69 | 0.24 | 0.00 | 0.38 | 0.87 | 0.82 | 0.62 |\n| ionocyte | 12 | 0.00 | 0.33 | 0.59 | 0.44 | 0.00 | 0.44 | 0.79 | 0.59 | 0.83 |\n| neuro-medullary thymic epithelial cell | 9 | 0.64 | 0.55 | 0.76 | 0.80 | 0.00 | 0.48 | 0.78 | 0.78 | 0.67 |\n| sebum secreting cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| type B pancreatic cell | 15 | 0.00 | 0.00 | 0.90 | 0.91 | 0.00 | 0.86 | 0.97 | 0.94 | 0.97 |\n| myo-medullary thymic epithelial cell | 4 | 0.00 | 0.00 | 0.00 | 0.89 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| interstitial cell of Cajal | 7 | 0.52 | 0.00 | 1.00 | 0.92 | 0.00 | 0.44 | 1.00 | 0.92 | 1.00 |\n| retinal pigment epithelial cell | 9 | 0.00 | 0.88 | 0.88 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| peritubular myoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pancreatic A cell | 10 | 0.00 | 0.00 | 0.90 | 0.00 | 0.00 | 0.73 | 1.00 | 0.95 | 0.89 |\n| vestibular dark cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.04 | 1.00 | 0.80 | 0.86 |\n| type L enteroendocrine cell | 7 | 0.00 | 0.00 | 0.67 | 0.40 | 0.00 | 0.41 | 1.00 | 0.83 | 0.60 |\n| medullary thymic epithelial cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.21 | 1.00 | 0.67 | 0.67 |\n| transit amplifying cell of small intestine | 4 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| taste receptor cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.38 | 0.00 | 0.29 | 0.40 |\n| enterochromaffin-like cell | 5 | 0.00 | 0.00 | 0.57 | 0.50 | 0.00 | 0.19 | 0.75 | 0.67 | 0.33 |\n| pulmonary ionocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.00 |\n| enteroendocrine cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 0.00 | 0.00 | 0.00 |\n| serous cell of epithelium of bronchus | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.07 | 1.00 | 1.00 | 1.00 |\n| pancreatic D cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 |\n| keratocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pancreatic PP cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| epithelial fate stem cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
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"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 30163 | 0.88 | 0.75 | 0.94 | 0.82 | 0.00 | 0.83 | 0.87 | 0.86 | 0.95 |\n| bladder urothelial cell | 24508 | 0.98 | 0.89 | 0.94 | 0.76 | 0.00 | 0.96 | 1.00 | 0.99 | 1.00 |\n| luminal epithelial cell of mammary gland | 13912 | 0.98 | 0.00 | 0.98 | 0.82 | 0.00 | 0.98 | 0.99 | 0.98 | 1.00 |\n| enterocyte of epithelium proper of duodenum | 12128 | 0.92 | 0.07 | 0.88 | 0.67 | 0.00 | 0.93 | 0.92 | 0.90 | 0.96 |\n| stratified squamous epithelial cell | 11123 | 0.83 | 0.77 | 0.93 | 0.80 | 0.00 | 0.86 | 0.85 | 0.85 | 0.91 |\n| acinar cell of salivary gland | 11041 | 0.93 | 0.67 | 0.94 | 0.75 | 0.00 | 0.92 | 0.96 | 0.95 | 0.98 |\n| pulmonary alveolar type 2 cell | 10412 | 0.98 | 0.96 | 0.98 | 0.80 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |\n| conjunctival epithelial cell | 9928 | 0.90 | 0.54 | 0.89 | 0.59 | 0.00 | 0.95 | 0.95 | 0.93 | 0.97 |\n| luminal cell of prostate epithelium | 9567 | 0.92 | 0.38 | 0.96 | 0.77 | 0.00 | 0.93 | 0.96 | 0.95 | 0.97 |\n| kidney epithelial cell | 8328 | 0.99 | 0.06 | 0.96 | 0.71 | 0.00 | 0.99 | 0.99 | 1.00 | 1.00 |\n| hepatocyte | 6674 | 1.00 | 0.99 | 0.98 | 0.84 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |\n| enterocyte of epithelium proper of ileum | 5800 | 0.97 | 0.01 | 0.89 | 0.60 | 0.00 | 0.96 | 0.98 | 0.97 | 0.99 |\n| pancreatic acinar cell | 4954 | 0.95 | 0.02 | 0.97 | 0.77 | 0.00 | 0.98 | 0.99 | 0.97 | 0.99 |\n| enterocyte of epithelium of large intestine | 4108 | 0.80 | 0.27 | 0.79 | 0.58 | 0.00 | 0.84 | 0.85 | 0.86 | 0.86 |\n| corneal epithelial cell | 3755 | 0.90 | 0.00 | 0.95 | 0.81 | 0.00 | 0.94 | 0.96 | 0.94 | 0.96 |\n| duct epithelial cell | 3533 | 0.78 | 0.45 | 0.90 | 0.72 | 0.00 | 0.84 | 0.86 | 0.83 | 0.92 |\n| basal cell of prostate epithelium | 3170 | 0.75 | 0.00 | 0.94 | 0.74 | 0.00 | 0.85 | 0.88 | 0.84 | 0.92 |\n| pulmonary alveolar type 1 cell | 2819 | 0.96 | 0.93 | 0.98 | 0.84 | 0.00 | 0.86 | 0.98 | 0.97 | 0.99 |\n| pancreatic ductal cell | 2456 | 0.89 | 0.05 | 0.95 | 0.80 | 0.00 | 0.95 | 0.97 | 0.95 | 0.97 |\n| small intestine goblet cell | 1846 | 0.86 | 0.56 | 0.94 | 0.82 | 0.00 | 0.89 | 0.93 | 0.92 | 0.95 |\n| paneth cell of epithelium of small intestine | 1654 | 0.66 | 0.40 | 0.80 | 0.57 | 0.00 | 0.62 | 0.73 | 0.75 | 0.83 |\n| club cell | 1555 | 0.78 | 0.73 | 0.92 | 0.66 | 0.00 | 0.76 | 0.84 | 0.79 | 0.91 |\n| intestinal crypt stem cell of colon | 1554 | 0.77 | 0.26 | 0.83 | 0.63 | 0.00 | 0.83 | 0.85 | 0.87 | 0.91 |\n| progenitor cell of mammary luminal epithelium | 1512 | 0.98 | 0.00 | 0.99 | 0.97 | 0.00 | 0.94 | 0.92 | 0.94 | 0.99 |\n| epithelial cell | 1476 | 0.95 | 0.32 | 0.83 | 0.61 | 0.00 | 0.97 | 0.98 | 0.97 | 0.97 |\n| large intestine goblet cell | 1395 | 0.88 | 0.25 | 0.83 | 0.69 | 0.00 | 0.91 | 0.95 | 0.93 | 0.95 |\n| enterocyte of epithelium proper of small intestine | 1267 | 0.52 | 0.00 | 0.74 | 0.38 | 0.00 | 0.84 | 0.75 | 0.76 | 0.88 |\n| epithelial cell of uterus | 1274 | 0.98 | 0.11 | 0.90 | 0.55 | 0.00 | 0.89 | 0.99 | 0.97 | 0.99 |\n| acinar cell | 1202 | 0.82 | 0.18 | 0.80 | 0.77 | 0.00 | 0.89 | 0.95 | 0.94 | 0.97 |\n| lung ciliated cell | 1098 | 0.71 | 0.09 | 0.92 | 0.94 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| respiratory goblet cell | 931 | 0.54 | 0.34 | 0.89 | 0.76 | 0.00 | 0.53 | 0.62 | 0.62 | 0.85 |\n| salivary gland cell | 771 | 0.61 | 0.01 | 0.95 | 0.79 | 0.00 | 0.84 | 0.74 | 0.76 | 0.93 |\n| ciliated columnar cell of tracheobronchial tree | 653 | 0.49 | 0.15 | 0.86 | 0.87 | 0.00 | 0.89 | 0.92 | 0.94 | 0.98 |\n| intrahepatic cholangiocyte | 598 | 0.97 | 0.17 | 0.96 | 0.74 | 0.00 | 0.83 | 0.99 | 0.95 | 0.98 |\n| blood vessel smooth muscle cell | 587 | 0.95 | 0.32 | 0.94 | 0.84 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| intestinal crypt stem cell of small intestine | 545 | 0.00 | 0.19 | 0.48 | 0.34 | 0.00 | 0.38 | 0.59 | 0.64 | 0.70 |\n| myoepithelial cell | 442 | 0.17 | 0.10 | 0.94 | 0.88 | 0.00 | 0.65 | 0.75 | 0.61 | 0.92 |\n| intestinal tuft cell | 414 | 0.77 | 0.82 | 0.97 | 0.88 | 0.00 | 0.97 | 0.99 | 0.98 | 0.96 |\n| enterocyte of epithelium proper of jejunum | 356 | 0.14 | 0.00 | 0.66 | 0.30 | 0.00 | 0.95 | 0.55 | 0.44 | 0.79 |\n| serous cell of epithelium of trachea | 299 | 0.64 | 0.00 | 0.88 | 0.62 | 0.00 | 0.29 | 0.56 | 0.62 | 0.93 |\n| mesothelial cell | 294 | 0.68 | 0.68 | 0.86 | 0.84 | 0.00 | 0.91 | 0.95 | 0.93 | 0.92 |\n| ciliated epithelial cell | 293 | 0.95 | 0.00 | 0.79 | 0.77 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| mucus secreting cell | 237 | 0.58 | 0.06 | 0.88 | 0.69 | 0.00 | 0.69 | 0.66 | 0.75 | 0.88 |\n| supporting cell of vestibular epithelium | 240 | 0.87 | 0.00 | 0.71 | 0.82 | 0.00 | 0.90 | 1.00 | 0.97 | 0.99 |\n| enteroendocrine cell of small intestine | 232 | 0.57 | 0.53 | 0.92 | 0.80 | 0.00 | 0.83 | 0.93 | 0.90 | 0.92 |\n| transit amplifying cell of colon | 215 | 0.41 | 0.13 | 0.58 | 0.53 | 0.00 | 0.68 | 0.70 | 0.70 | 0.85 |\n| ovarian surface epithelial cell | 216 | 0.00 | 0.11 | 0.86 | 0.84 | 0.00 | 0.97 | 0.99 | 0.97 | 0.98 |\n| tracheal goblet cell | 203 | 0.00 | 0.16 | 0.90 | 0.72 | 0.00 | 0.68 | 0.85 | 0.71 | 0.95 |\n| paneth cell of colon | 200 | 0.00 | 0.07 | 0.75 | 0.69 | 0.00 | 0.49 | 0.68 | 0.52 | 0.90 |\n| glandular epithelial cell | 201 | 0.82 | 0.03 | 0.75 | 0.68 | 0.00 | 0.92 | 0.99 | 0.90 | 1.00 |\n| tuft cell of colon | 159 | 0.00 | 0.16 | 0.95 | 0.66 | 0.00 | 0.83 | 0.98 | 0.92 | 0.98 |\n| ionocyte | 148 | 0.00 | 0.28 | 0.83 | 0.76 | 0.00 | 0.61 | 0.87 | 0.80 | 0.89 |\n| neuro-medullary thymic epithelial cell | 115 | 0.64 | 0.10 | 0.90 | 0.80 | 0.00 | 0.88 | 0.82 | 0.86 | 0.90 |\n| sebum secreting cell | 106 | 0.00 | 0.00 | 0.91 | 0.44 | 0.00 | 0.87 | 0.98 | 0.71 | 0.97 |\n| type B pancreatic cell | 87 | 0.00 | 0.00 | 0.93 | 0.89 | 0.00 | 0.87 | 1.00 | 0.99 | 0.99 |\n| myo-medullary thymic epithelial cell | 73 | 0.00 | 0.00 | 0.94 | 0.88 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| interstitial cell of Cajal | 63 | 0.39 | 0.00 | 1.00 | 0.90 | 0.00 | 0.63 | 0.99 | 0.98 | 0.99 |\n| retinal pigment epithelial cell | 58 | 0.00 | 0.02 | 1.00 | 0.97 | 0.00 | 0.94 | 0.99 | 0.99 | 1.00 |\n| peritubular myoid cell | 61 | 0.00 | 0.00 | 0.77 | 0.70 | 0.00 | 0.70 | 0.98 | 0.88 | 0.96 |\n| pancreatic A cell | 38 | 0.00 | 0.00 | 0.95 | 0.78 | 0.00 | 0.84 | 1.00 | 1.00 | 1.00 |\n| vestibular dark cell | 41 | 0.00 | 0.00 | 0.71 | 0.41 | 0.00 | 0.13 | 1.00 | 0.91 | 0.99 |\n| type L enteroendocrine cell | 37 | 0.00 | 0.00 | 0.88 | 0.56 | 0.00 | 0.79 | 1.00 | 0.99 | 0.96 |\n| medullary thymic epithelial cell | 31 | 0.00 | 0.00 | 0.85 | 0.48 | 0.00 | 0.65 | 1.00 | 0.78 | 0.97 |\n| transit amplifying cell of small intestine | 30 | 0.00 | 0.00 | 0.37 | 0.00 | 0.00 | 0.32 | 0.85 | 0.81 | 0.90 |\n| taste receptor cell | 28 | 0.00 | 0.00 | 0.56 | 0.68 | 0.00 | 0.58 | 0.88 | 0.49 | 0.96 |\n| enterochromaffin-like cell | 22 | 0.00 | 0.00 | 0.83 | 0.52 | 0.00 | 0.64 | 0.98 | 0.96 | 0.98 |\n| pulmonary ionocyte | 24 | 0.00 | 0.00 | 0.89 | 0.77 | 0.00 | 0.39 | 1.00 | 0.86 | 0.94 |\n| enteroendocrine cell | 24 | 0.00 | 0.00 | 0.88 | 0.60 | 0.00 | 0.75 | 0.92 | 0.94 | 0.94 |\n| serous cell of epithelium of bronchus | 14 | 0.00 | 0.00 | 0.70 | 0.35 | 0.00 | 0.43 | 0.93 | 1.00 | 0.96 |\n| pancreatic D cell | 8 | 0.00 | 0.00 | 0.57 | 0.40 | 0.00 | 0.74 | 1.00 | 0.94 | 0.93 |\n| keratocyte | 7 | 0.00 | 0.00 | 0.44 | 0.00 | 0.00 | 0.54 | 0.93 | 0.44 | 0.60 |\n| pancreatic PP cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.31 | 1.00 | 1.00 | 1.00 |\n| epithelial fate stem cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 0.50 | 1.00 | 0.00 |"
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}
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celltypist.pkl
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version https://git-lfs.github.com/spec/v1
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oid sha256:3927c117dd312b68c981d9aa39e3990d44acca6eb02bddc54ff87e79bef8c719
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size 1339674
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checkpoint
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model_checkpoint_path: "OnClass"
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all_model_checkpoint_paths: "OnClass"
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harmony_knn_classifier.joblib
ADDED
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version https://git-lfs.github.com/spec/v1
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obo_dag.joblib
ADDED
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1 |
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version https://git-lfs.github.com/spec/v1
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3 |
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popv_output/predictions.csv
ADDED
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|
preprocessing.json
ADDED
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|
|
pynndescent_index.joblib
ADDED
@@ -0,0 +1,3 @@
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|
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1 |
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version https://git-lfs.github.com/spec/v1
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scanvi/model.pt
ADDED
@@ -0,0 +1,3 @@
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1 |
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version https://git-lfs.github.com/spec/v1
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scvi/model.pt
ADDED
@@ -0,0 +1,3 @@
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1 |
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version https://git-lfs.github.com/spec/v1
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scvi_knn_classifier.joblib
ADDED
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version https://git-lfs.github.com/spec/v1
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svm_classifier_cuml.joblib
ADDED
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xgboost_classifier.model
ADDED
@@ -0,0 +1,3 @@
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|
|
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|
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|
|
1 |
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version https://git-lfs.github.com/spec/v1
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size 17897999
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