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tabula_sapiens_Fat

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biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Fat
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@@ -32,31 +32,31 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
- | fibroblast | 2663 | 0.90 | 0.91 | 0.96 | 0.94 | 0.00 | 0.88 | 0.87 | 0.90 | 0.94 |
36
- | macrophage | 1541 | 0.91 | 0.93 | 0.95 | 0.94 | 0.00 | 0.89 | 0.91 | 0.92 | 0.94 |
37
- | B cell | 1469 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
38
- | CD4-positive, alpha-beta T cell | 1128 | 0.88 | 0.89 | 0.88 | 0.87 | 0.00 | 0.83 | 0.85 | 0.87 | 0.90 |
39
- | endothelial cell | 623 | 0.95 | 0.97 | 0.98 | 0.96 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |
40
- | CD8-positive, alpha-beta T cell | 529 | 0.72 | 0.75 | 0.75 | 0.68 | 0.00 | 0.72 | 0.75 | 0.76 | 0.78 |
41
- | mesenchymal stem cell of adipose tissue | 404 | 0.51 | 0.10 | 0.68 | 0.58 | 0.00 | 0.54 | 0.48 | 0.54 | 0.64 |
42
- | neutrophil | 303 | 0.96 | 0.96 | 0.98 | 0.96 | 0.00 | 0.96 | 0.97 | 0.95 | 0.97 |
43
- | smooth muscle cell | 211 | 0.84 | 0.86 | 0.91 | 0.85 | 0.00 | 0.85 | 0.86 | 0.88 | 0.90 |
44
- | myofibroblast cell | 133 | 0.80 | 0.82 | 0.88 | 0.80 | 0.00 | 0.82 | 0.87 | 0.89 | 0.88 |
45
- | natural killer cell | 69 | 0.80 | 0.81 | 0.80 | 0.77 | 0.00 | 0.74 | 0.77 | 0.81 | 0.82 |
46
- | pericyte | 92 | 0.88 | 0.57 | 0.93 | 0.87 | 0.00 | 0.71 | 0.79 | 0.86 | 0.90 |
47
- | monocyte | 85 | 0.61 | 0.72 | 0.75 | 0.68 | 0.00 | 0.71 | 0.70 | 0.70 | 0.77 |
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- | mature NK T cell | 42 | 0.72 | 0.72 | 0.70 | 0.45 | 0.00 | 0.69 | 0.68 | 0.73 | 0.77 |
49
- | T cell | 28 | 0.37 | 0.40 | 0.51 | 0.52 | 0.00 | 0.20 | 0.22 | 0.23 | 0.44 |
50
- | plasma cell | 37 | 0.71 | 0.92 | 0.90 | 0.87 | 0.00 | 0.86 | 0.96 | 0.80 | 0.92 |
51
- | erythrocyte | 24 | 0.98 | 0.98 | 0.94 | 0.84 | 0.00 | 0.88 | 0.98 | 0.94 | 0.96 |
52
- | muscle cell | 25 | 0.96 | 0.75 | 1.00 | 0.96 | 0.00 | 0.92 | 0.96 | 0.94 | 0.96 |
53
- | leukocyte | 15 | 0.67 | 0.67 | 0.62 | 0.38 | 0.00 | 0.43 | 0.55 | 0.53 | 0.70 |
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- | mast cell | 7 | 0.70 | 0.82 | 1.00 | 0.93 | 0.00 | 0.74 | 0.93 | 0.70 | 0.82 |
55
- | hematopoietic precursor cell | 9 | 0.10 | 0.00 | 0.80 | 0.59 | 0.00 | 0.40 | 0.64 | 0.61 | 0.67 |
56
- | intermediate monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 0.00 | 0.00 | 0.00 |
57
- | mesenchymal stem cell | 1 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.02 | 1.00 | 0.00 | 1.00 |
58
- | myeloid dendritic cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
59
- | classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
60
  | non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | activated CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -65,34 +65,34 @@ The train accuracies are computed on the training data.
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66
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
67
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
68
- | fibroblast | 23306 | 0.90 | 0.91 | 0.97 | 0.97 | 0.00 | 0.90 | 0.88 | 0.92 | 0.95 |
69
- | macrophage | 13712 | 0.91 | 0.93 | 0.97 | 0.96 | 0.00 | 0.90 | 0.93 | 0.92 | 0.95 |
70
- | B cell | 13300 | 0.99 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
71
- | CD4-positive, alpha-beta T cell | 10353 | 0.89 | 0.90 | 0.92 | 0.91 | 0.00 | 0.85 | 0.87 | 0.89 | 0.92 |
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- | endothelial cell | 6343 | 0.96 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |
73
- | CD8-positive, alpha-beta T cell | 4673 | 0.73 | 0.76 | 0.83 | 0.79 | 0.00 | 0.74 | 0.76 | 0.79 | 0.81 |
74
- | mesenchymal stem cell of adipose tissue | 3373 | 0.50 | 0.08 | 0.78 | 0.74 | 0.00 | 0.56 | 0.50 | 0.59 | 0.69 |
75
- | neutrophil | 3076 | 0.97 | 0.97 | 0.99 | 0.98 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |
76
- | smooth muscle cell | 1749 | 0.84 | 0.85 | 0.97 | 0.92 | 0.00 | 0.93 | 0.92 | 0.93 | 0.96 |
77
- | myofibroblast cell | 933 | 0.79 | 0.78 | 0.96 | 0.88 | 0.00 | 0.93 | 0.92 | 0.91 | 0.94 |
78
- | natural killer cell | 804 | 0.84 | 0.84 | 0.89 | 0.85 | 0.00 | 0.81 | 0.88 | 0.90 | 0.90 |
79
- | pericyte | 772 | 0.89 | 0.44 | 0.95 | 0.92 | 0.00 | 0.75 | 0.85 | 0.87 | 0.94 |
80
- | monocyte | 756 | 0.62 | 0.75 | 0.86 | 0.82 | 0.00 | 0.72 | 0.74 | 0.72 | 0.80 |
81
- | mature NK T cell | 336 | 0.72 | 0.75 | 0.80 | 0.47 | 0.00 | 0.73 | 0.82 | 0.86 | 0.88 |
82
- | T cell | 303 | 0.42 | 0.27 | 0.63 | 0.60 | 0.00 | 0.29 | 0.40 | 0.44 | 0.59 |
83
- | plasma cell | 276 | 0.74 | 0.89 | 0.96 | 0.95 | 0.00 | 0.82 | 0.97 | 0.83 | 0.95 |
84
- | erythrocyte | 258 | 0.98 | 0.94 | 0.97 | 0.95 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |
85
- | muscle cell | 238 | 0.98 | 0.50 | 1.00 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
86
- | leukocyte | 153 | 0.69 | 0.72 | 0.81 | 0.58 | 0.00 | 0.70 | 0.76 | 0.68 | 0.85 |
87
- | mast cell | 128 | 0.81 | 0.90 | 0.98 | 0.96 | 0.00 | 0.87 | 0.98 | 0.89 | 0.94 |
88
- | hematopoietic precursor cell | 65 | 0.35 | 0.00 | 0.78 | 0.70 | 0.00 | 0.49 | 0.74 | 0.71 | 0.80 |
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- | intermediate monocyte | 41 | 0.00 | 0.00 | 0.23 | 0.19 | 0.00 | 0.16 | 0.54 | 0.78 | 0.79 |
90
- | mesenchymal stem cell | 16 | 0.00 | 0.00 | 0.61 | 0.40 | 0.00 | 0.05 | 0.94 | 0.82 | 0.67 |
91
- | myeloid dendritic cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.04 | 1.00 | 1.00 | 0.86 |
92
- | classical monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.13 | 1.00 | 1.00 | 0.67 |
93
- | non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 1.00 | 1.00 | 1.00 |
94
- | activated CD4-positive, alpha-beta T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 0.00 |
95
- | platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 1.00 | 1.00 | 0.00 |
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  </details>
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32
 
33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | fibroblast | 2680 | 0.89 | 0.92 | 0.96 | 0.94 | 0.00 | 0.89 | 0.89 | 0.90 | 0.94 |
36
+ | macrophage | 1544 | 0.90 | 0.93 | 0.95 | 0.93 | 0.00 | 0.89 | 0.91 | 0.91 | 0.94 |
37
+ | B cell | 1452 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
38
+ | CD4-positive, alpha-beta T cell | 1131 | 0.89 | 0.89 | 0.89 | 0.87 | 0.00 | 0.87 | 0.85 | 0.87 | 0.90 |
39
+ | endothelial cell | 627 | 0.95 | 0.96 | 0.97 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |
40
+ | CD8-positive, alpha-beta T cell | 527 | 0.74 | 0.76 | 0.75 | 0.71 | 0.00 | 0.74 | 0.75 | 0.76 | 0.78 |
41
+ | mesenchymal stem cell of adipose tissue | 395 | 0.50 | 0.11 | 0.66 | 0.62 | 0.00 | 0.52 | 0.51 | 0.55 | 0.65 |
42
+ | neutrophil | 299 | 0.95 | 0.96 | 0.99 | 0.97 | 0.00 | 0.95 | 0.97 | 0.96 | 0.98 |
43
+ | smooth muscle cell | 215 | 0.85 | 0.86 | 0.92 | 0.83 | 0.00 | 0.84 | 0.87 | 0.90 | 0.91 |
44
+ | myofibroblast cell | 132 | 0.80 | 0.81 | 0.88 | 0.76 | 0.00 | 0.83 | 0.86 | 0.89 | 0.87 |
45
+ | natural killer cell | 70 | 0.82 | 0.80 | 0.84 | 0.76 | 0.00 | 0.77 | 0.80 | 0.79 | 0.84 |
46
+ | pericyte | 97 | 0.89 | 0.58 | 0.93 | 0.91 | 0.00 | 0.73 | 0.81 | 0.88 | 0.92 |
47
+ | monocyte | 78 | 0.56 | 0.77 | 0.77 | 0.71 | 0.00 | 0.64 | 0.66 | 0.69 | 0.73 |
48
+ | mature NK T cell | 40 | 0.76 | 0.75 | 0.72 | 0.45 | 0.00 | 0.72 | 0.72 | 0.72 | 0.76 |
49
+ | T cell | 31 | 0.33 | 0.35 | 0.54 | 0.40 | 0.00 | 0.25 | 0.22 | 0.28 | 0.48 |
50
+ | plasma cell | 39 | 0.76 | 0.93 | 0.93 | 0.87 | 0.00 | 0.82 | 0.96 | 0.84 | 0.95 |
51
+ | erythrocyte | 25 | 0.98 | 0.98 | 0.96 | 0.90 | 0.00 | 0.88 | 0.98 | 0.91 | 0.96 |
52
+ | muscle cell | 26 | 0.95 | 0.84 | 0.92 | 0.96 | 0.00 | 0.93 | 0.96 | 0.96 | 0.98 |
53
+ | leukocyte | 16 | 0.54 | 0.79 | 0.62 | 0.58 | 0.00 | 0.53 | 0.64 | 0.54 | 0.65 |
54
+ | mast cell | 7 | 0.74 | 0.88 | 0.92 | 0.93 | 0.00 | 0.82 | 0.88 | 0.74 | 0.93 |
55
+ | hematopoietic precursor cell | 5 | 0.00 | 0.00 | 0.73 | 0.80 | 0.00 | 0.27 | 0.57 | 0.50 | 0.62 |
56
+ | intermediate monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 0.00 | 0.00 | 0.00 |
57
+ | mesenchymal stem cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 1.00 | 0.00 | 0.00 |
58
+ | myeloid dendritic cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
59
+ | classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
60
  | non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
61
  | activated CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
62
  | platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
65
 
66
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
67
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
68
+ | fibroblast | 23289 | 0.90 | 0.91 | 0.97 | 0.97 | 0.00 | 0.90 | 0.89 | 0.91 | 0.95 |
69
+ | macrophage | 13709 | 0.91 | 0.93 | 0.97 | 0.96 | 0.00 | 0.91 | 0.92 | 0.92 | 0.95 |
70
+ | B cell | 13317 | 0.99 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
71
+ | CD4-positive, alpha-beta T cell | 10350 | 0.88 | 0.90 | 0.92 | 0.91 | 0.00 | 0.88 | 0.87 | 0.89 | 0.92 |
72
+ | endothelial cell | 6339 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |
73
+ | CD8-positive, alpha-beta T cell | 4675 | 0.72 | 0.76 | 0.83 | 0.78 | 0.00 | 0.76 | 0.76 | 0.80 | 0.81 |
74
+ | mesenchymal stem cell of adipose tissue | 3382 | 0.49 | 0.09 | 0.79 | 0.74 | 0.00 | 0.55 | 0.52 | 0.58 | 0.68 |
75
+ | neutrophil | 3080 | 0.97 | 0.96 | 0.99 | 0.98 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |
76
+ | smooth muscle cell | 1745 | 0.84 | 0.84 | 0.97 | 0.90 | 0.00 | 0.94 | 0.92 | 0.92 | 0.95 |
77
+ | myofibroblast cell | 934 | 0.79 | 0.78 | 0.96 | 0.84 | 0.00 | 0.95 | 0.91 | 0.91 | 0.94 |
78
+ | natural killer cell | 803 | 0.84 | 0.84 | 0.89 | 0.85 | 0.00 | 0.87 | 0.89 | 0.90 | 0.91 |
79
+ | pericyte | 767 | 0.90 | 0.39 | 0.95 | 0.93 | 0.00 | 0.70 | 0.82 | 0.86 | 0.93 |
80
+ | monocyte | 763 | 0.59 | 0.76 | 0.86 | 0.83 | 0.00 | 0.73 | 0.72 | 0.71 | 0.77 |
81
+ | mature NK T cell | 338 | 0.76 | 0.73 | 0.82 | 0.62 | 0.00 | 0.76 | 0.80 | 0.83 | 0.88 |
82
+ | T cell | 300 | 0.36 | 0.27 | 0.64 | 0.56 | 0.00 | 0.30 | 0.40 | 0.43 | 0.53 |
83
+ | plasma cell | 274 | 0.76 | 0.88 | 0.96 | 0.93 | 0.00 | 0.81 | 0.96 | 0.83 | 0.95 |
84
+ | erythrocyte | 257 | 0.97 | 0.92 | 0.97 | 0.94 | 0.00 | 0.97 | 0.99 | 0.97 | 0.98 |
85
+ | muscle cell | 237 | 0.98 | 0.57 | 1.00 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |
86
+ | leukocyte | 152 | 0.62 | 0.69 | 0.82 | 0.61 | 0.00 | 0.68 | 0.77 | 0.69 | 0.86 |
87
+ | mast cell | 128 | 0.81 | 0.92 | 0.98 | 0.95 | 0.00 | 0.92 | 0.98 | 0.88 | 0.94 |
88
+ | hematopoietic precursor cell | 69 | 0.31 | 0.00 | 0.80 | 0.71 | 0.00 | 0.39 | 0.76 | 0.72 | 0.82 |
89
+ | intermediate monocyte | 42 | 0.00 | 0.00 | 0.27 | 0.30 | 0.00 | 0.13 | 0.57 | 0.73 | 0.80 |
90
+ | mesenchymal stem cell | 16 | 0.00 | 0.00 | 0.61 | 0.12 | 0.00 | 0.07 | 0.80 | 0.84 | 0.77 |
91
+ | myeloid dendritic cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 1.00 | 1.00 | 0.00 |
92
+ | classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 1.00 | 1.00 | 0.00 |
93
+ | non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 1.00 | 1.00 | 1.00 |
94
+ | activated CD4-positive, alpha-beta T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |
95
+ | platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.15 | 1.00 | 1.00 | 0.00 |
96
 
97
  </details>
98