canergen commited on
Commit
20837f8
·
verified ·
1 Parent(s): 33d8fa8

Upload folder using huggingface_hub

Browse files
.gitattributes CHANGED
@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
 
 
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
36
+ OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
OnClass.data-00000-of-00001 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7b6a0ff667c17a78a2179025911c04d1c98c3ccf5cc3cb105e44b2d581473bbc
3
+ size 27239224
OnClass.index ADDED
Binary file (222 Bytes). View file
 
OnClass.meta ADDED
Binary file (74.5 kB). View file
 
OnClass.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f9d731ab6b38016672faef9983f9d5e905df30ea0bf3ff7092924b62d3be727d
3
+ size 144111752
accuracies.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| stromal cell of ovary | 3496 | 0.98 | 0.97 | 0.96 | 0.98 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |\n| blood vessel smooth muscle cell | 654 | 0.97 | 0.93 | 0.95 | 0.94 | 0.00 | 0.95 | 0.95 | 0.92 | 0.98 |\n| stromal cell | 221 | 0.96 | 0.73 | 0.47 | 0.82 | 0.00 | 0.89 | 0.87 | 0.92 | 0.96 |\n| endothelial cell | 166 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.97 | 0.99 |\n| smooth muscle cell | 106 | 0.94 | 0.60 | 0.69 | 0.77 | 0.00 | 0.89 | 0.93 | 0.90 | 0.96 |\n| theca cell | 122 | 0.72 | 0.73 | 0.89 | 0.82 | 0.00 | 0.70 | 0.74 | 0.73 | 0.84 |\n| macrophage | 57 | 0.96 | 0.96 | 0.96 | 0.90 | 0.00 | 0.95 | 0.95 | 0.94 | 0.96 |\n| ovarian surface epithelial cell | 20 | 0.98 | 0.98 | 0.97 | 0.83 | 0.00 | 0.62 | 0.98 | 0.91 | 0.98 |\n| glandular epithelial cell | 27 | 0.98 | 0.90 | 0.96 | 0.84 | 0.00 | 0.96 | 0.98 | 0.96 | 1.00 |\n| CD8-positive, alpha-beta T cell | 7 | 0.67 | 0.67 | 0.75 | 0.78 | 0.00 | 0.78 | 0.88 | 0.82 | 0.82 |\n| leukocyte | 4 | 0.00 | 0.00 | 0.57 | 0.40 | 0.00 | 0.86 | 0.67 | 0.67 | 0.67 |\n| CD4-positive, alpha-beta T cell | 4 | 0.00 | 0.33 | 0.67 | 0.00 | 0.00 | 0.33 | 0.67 | 0.00 | 0.40 |\n| glial cell | 1 | 0.67 | 0.00 | 0.67 | 0.00 | 0.00 | 0.06 | 0.67 | 0.67 | 0.67 |\n| oocyte | 3 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.86 | 0.86 | 1.00 | 1.00 |\n| neutrophil | 2 | 0.67 | 1.00 | 0.67 | 0.50 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 4 | 0.33 | 0.67 | 0.86 | 0.33 | 0.00 | 0.30 | 0.40 | 0.67 | 0.67 |\n| epithelial cell | 1 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| hematopoietic precursor cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
3
+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| stromal cell of ovary | 31507 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |\n| blood vessel smooth muscle cell | 5988 | 0.96 | 0.89 | 0.97 | 0.95 | 0.00 | 0.96 | 0.95 | 0.93 | 0.98 |\n| stromal cell | 1938 | 0.97 | 0.72 | 0.72 | 0.91 | 0.00 | 0.95 | 0.89 | 0.93 | 0.98 |\n| endothelial cell | 1558 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| smooth muscle cell | 1165 | 0.96 | 0.55 | 0.85 | 0.84 | 0.00 | 0.95 | 0.96 | 0.96 | 0.98 |\n| theca cell | 916 | 0.68 | 0.60 | 0.93 | 0.86 | 0.00 | 0.68 | 0.72 | 0.69 | 0.80 |\n| macrophage | 347 | 0.95 | 0.91 | 0.96 | 0.92 | 0.00 | 0.96 | 0.97 | 0.98 | 0.98 |\n| ovarian surface epithelial cell | 221 | 0.96 | 0.95 | 0.98 | 0.97 | 0.00 | 0.68 | 0.92 | 0.92 | 0.99 |\n| glandular epithelial cell | 208 | 0.96 | 0.82 | 0.99 | 0.95 | 0.00 | 0.93 | 0.98 | 0.95 | 0.99 |\n| CD8-positive, alpha-beta T cell | 66 | 0.76 | 0.74 | 0.87 | 0.77 | 0.00 | 0.96 | 1.00 | 1.00 | 0.92 |\n| leukocyte | 23 | 0.00 | 0.00 | 0.79 | 0.78 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| CD4-positive, alpha-beta T cell | 19 | 0.00 | 0.00 | 0.50 | 0.37 | 0.00 | 0.92 | 1.00 | 1.00 | 0.73 |\n| glial cell | 19 | 0.76 | 0.27 | 0.81 | 0.69 | 0.00 | 0.14 | 0.86 | 0.79 | 0.82 |\n| oocyte | 15 | 0.00 | 0.83 | 0.85 | 0.88 | 0.00 | 0.83 | 0.81 | 0.86 | 0.85 |\n| neutrophil | 15 | 0.60 | 1.00 | 1.00 | 0.75 | 0.00 | 0.88 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 10 | 0.18 | 0.57 | 0.82 | 0.46 | 0.00 | 0.08 | 0.95 | 0.95 | 0.95 |\n| epithelial cell | 8 | 0.00 | 0.00 | 0.82 | 0.93 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| plasmacytoid dendritic cell | 5 | 0.00 | 0.00 | 0.60 | 0.62 | 0.00 | 0.31 | 1.00 | 1.00 | 0.91 |\n| monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 |\n| B cell | 3 | 0.00 | 0.00 | 0.67 | 0.50 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |\n| classical monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.50 |\n| mast cell | 2 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 0.67 |\n| T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 0.67 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.00 |\n| hematopoietic precursor cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 1.00 | 1.00 | 1.00 |"
4
+ }
celltypist.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c8746a6f9df0b40e32bbfdb990b52e88f14bf4b856a051735b48e5668dd96ad7
3
+ size 585812
checkpoint ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ model_checkpoint_path: "OnClass"
2
+ all_model_checkpoint_paths: "OnClass"
harmony_knn_classifier.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ea428e16585ebb92a5298bd75a86e2209accab6d2080a40386380c2364989a52
3
+ size 34296709
obo_dag.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:88b6c19fc939f3c304978a10ef8b7cc6ba69d2d4a0a0613df8312b4ee3a26313
3
+ size 321386
popv_output/predictions.csv ADDED
The diff for this file is too large to render. See raw diff
 
preprocessing.json ADDED
The diff for this file is too large to render. See raw diff
 
pynndescent_index.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7f9dede18cddd8a04a9e6e0ece4033ba0088c9a857ecca1f3eb57fc0ebf15930
3
+ size 36770569
scanvi/model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:876ddb277db5fefc419953f1418cf6d0f2632b79b7c144f6cbefc6fe4c37ed03
3
+ size 11823852
scvi/model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:924b6a46e5acec351d682211c333adf281374a9113dcde0a2a7baa0d79adb685
3
+ size 11246653
scvi_knn_classifier.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:45c82c5a6a36bf781f2064dea1ff764f2bd3c4a984f92e1ccc26128fed0969fc
3
+ size 19024469
svm_classifier_cuml.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fc5f1c9905fcff92687927c97b93b42b3adcfdc338efd1676d2a3876ea65a1f9
3
+ size 444667
xgboost_classifier.model ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:728aeb035312f44ec378b8c1ac85d2a8be9fee3fb7fd72756abd5626d0956f3b
3
+ size 6014389