Upload folder using huggingface_hub

OnClass.data-00000-of-00001

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:1240ae08dfd5bb74bf859170bce8e7fdd376b6a72bb4a727deeabeaa7598a48f
+oid sha256:204a6d7616238aa54333a5163db6f05d903d05b2e2c042b00110c6b33959bf5f
 size 27239224

OnClass.npz

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:c03453278f88109846c1790ea2a45e8a10f4cf245ae12948d6e553c09575364f
-size 144112076
+oid sha256:d1907123f7eb7f477ce6181b2be13b5ea54dc3f765468f552438d5937ae05229
+size 144112086

accuracies.json

@@ -1,4 +1,4 @@
 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 1038 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.90 | 0.97 | 0.97 | 0.99 |\n| neutrophil | 479 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.94 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 174 | 0.98 | 0.96 | 0.97 | 0.99 | 0.00 | 0.92 | 0.97 | 0.98 | 0.98 |\n| CD8-positive, alpha-beta T cell | 124 | 0.92 | 0.92 | 0.94 | 0.84 | 0.00 | 0.95 | 0.95 | 0.93 | 0.95 |\n| ciliated columnar cell of tracheobronchial tree | 63 | 0.95 | 0.92 | 0.93 | 0.98 | 0.00 | 0.77 | 0.92 | 0.92 | 0.94 |\n| macrophage | 68 | 0.96 | 0.96 | 0.96 | 0.94 | 0.00 | 0.93 | 0.98 | 0.93 | 0.98 |\n| B cell | 62 | 0.96 | 0.96 | 0.98 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 0.98 |\n| endothelial cell | 53 | 0.97 | 0.97 | 0.99 | 0.99 | 0.00 | 0.94 | 1.00 | 1.00 | 1.00 |\n| serous cell of epithelium of trachea | 26 | 0.48 | 0.27 | 0.70 | 0.69 | 0.00 | 0.36 | 0.51 | 0.56 | 0.71 |\n| plasma cell | 20 | 0.95 | 0.93 | 0.98 | 1.00 | 0.00 | 0.93 | 0.93 | 0.95 | 0.98 |\n| CD4-positive, alpha-beta T cell | 29 | 0.79 | 0.72 | 0.77 | 0.20 | 0.00 | 0.79 | 0.86 | 0.83 | 0.85 |\n| mucus secreting cell | 31 | 0.72 | 0.80 | 0.83 | 0.83 | 0.00 | 0.71 | 0.77 | 0.82 | 0.86 |\n| tracheal goblet cell | 32 | 0.74 | 0.65 | 0.86 | 0.89 | 0.00 | 0.74 | 0.84 | 0.79 | 0.92 |\n| connective tissue cell | 8 | 0.94 | 0.00 | 0.89 | 1.00 | 0.00 | 0.80 | 0.94 | 0.94 | 1.00 |\n| smooth muscle cell | 17 | 0.84 | 0.79 | 0.89 | 0.91 | 0.00 | 0.85 | 0.84 | 0.91 | 0.84 |\n| mast cell | 13 | 0.96 | 0.96 | 0.96 | 0.96 | 0.00 | 0.96 | 1.00 | 1.00 | 0.96 |\n| monocyte | 7 | 0.80 | 0.77 | 0.67 | 0.67 | 0.00 | 0.57 | 0.82 | 0.77 | 0.80 |\n| natural killer cell | 7 | 0.58 | 0.71 | 0.73 | 0.53 | 0.00 | 0.74 | 0.82 | 0.78 | 0.82 |\n| granulocyte | 4 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.11 | 0.00 | 0.29 | 0.00 |\n| mature NK T cell | 5 | 0.29 | 0.00 | 0.67 | 0.33 | 0.00 | 0.75 | 0.91 | 1.00 | 1.00 |\n| T cell | 2 | 0.00 | 0.67 | 1.00 | 0.00 | 0.00 | 0.12 | 0.00 | 0.00 | 0.00 |\n| ionocyte | 2 | 0.80 | 0.00 | 0.50 | 0.67 | 0.00 | 0.20 | 1.00 | 1.00 | 1.00 |\n| regulatory T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| innate lymphoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 9209 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.94 | 0.98 | 0.98 | 0.99 |\n| neutrophil | 4205 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 1.00 |\n| fibroblast | 1626 | 0.96 | 0.93 | 0.97 | 0.98 | 0.00 | 0.94 | 0.98 | 0.99 | 0.98 |\n| CD8-positive, alpha-beta T cell | 1078 | 0.89 | 0.91 | 0.94 | 0.88 | 0.00 | 0.95 | 0.97 | 0.98 | 0.96 |\n| ciliated columnar cell of tracheobronchial tree | 650 | 0.96 | 0.97 | 0.96 | 0.98 | 0.00 | 0.87 | 0.98 | 0.97 | 0.99 |\n| macrophage | 644 | 0.92 | 0.92 | 0.94 | 0.92 | 0.00 | 0.95 | 0.98 | 0.99 | 0.96 |\n| B cell | 565 | 0.97 | 0.96 | 0.97 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |\n| endothelial cell | 533 | 0.96 | 0.97 | 0.98 | 0.99 | 0.00 | 0.94 | 0.99 | 0.98 | 0.99 |\n| serous cell of epithelium of trachea | 300 | 0.67 | 0.02 | 0.88 | 0.88 | 0.00 | 0.67 | 0.78 | 0.80 | 0.92 |\n| plasma cell | 272 | 0.98 | 0.97 | 0.99 | 0.96 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |\n| CD4-positive, alpha-beta T cell | 249 | 0.72 | 0.67 | 0.78 | 0.44 | 0.00 | 0.86 | 0.94 | 0.96 | 0.85 |\n| mucus secreting cell | 239 | 0.71 | 0.73 | 0.87 | 0.88 | 0.00 | 0.75 | 0.87 | 0.90 | 0.92 |\n| tracheal goblet cell | 200 | 0.73 | 0.50 | 0.88 | 0.88 | 0.00 | 0.79 | 0.86 | 0.82 | 0.96 |\n| connective tissue cell | 144 | 0.81 | 0.00 | 0.90 | 0.96 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| smooth muscle cell | 114 | 0.79 | 0.74 | 0.86 | 0.90 | 0.00 | 0.80 | 0.91 | 0.90 | 0.88 |\n| mast cell | 106 | 0.96 | 0.96 | 0.96 | 0.99 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |\n| monocyte | 74 | 0.57 | 0.48 | 0.73 | 0.50 | 0.00 | 0.76 | 0.95 | 0.99 | 0.82 |\n| natural killer cell | 57 | 0.53 | 0.47 | 0.67 | 0.55 | 0.00 | 0.81 | 0.84 | 0.83 | 0.89 |\n| granulocyte | 35 | 0.00 | 0.00 | 0.36 | 0.36 | 0.00 | 0.17 | 0.72 | 0.69 | 0.48 |\n| mature NK T cell | 32 | 0.31 | 0.06 | 0.67 | 0.39 | 0.00 | 0.69 | 0.91 | 0.94 | 0.84 |\n| T cell | 17 | 0.00 | 0.00 | 0.48 | 0.00 | 0.00 | 0.27 | 1.00 | 0.92 | 0.87 |\n| ionocyte | 16 | 0.42 | 0.00 | 0.83 | 0.69 | 0.00 | 0.43 | 1.00 | 0.89 | 1.00 |\n| regulatory T cell | 14 | 0.00 | 0.00 | 0.32 | 0.24 | 0.00 | 0.43 | 1.00 | 1.00 | 0.67 |\n| intermediate monocyte | 16 | 0.00 | 0.00 | 0.47 | 0.23 | 0.00 | 0.67 | 0.97 | 0.97 | 0.81 |\n| non-classical monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.75 | 1.00 | 1.00 | 0.00 |\n| innate lymphoid cell | 2 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.67 | 0.80 | 1.00 | 1.00 |\n| plasmacytoid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 1.00 | 1.00 | 1.00 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 1021 | 0.99 | 0.98 | 0.98 | 0.99 | 0.00 | 0.89 | 0.98 | 0.97 | 0.99 |\n| neutrophil | 461 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.92 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 169 | 0.96 | 0.95 | 0.97 | 0.96 | 0.00 | 0.95 | 0.97 | 0.96 | 0.97 |\n| CD8-positive, alpha-beta T cell | 126 | 0.90 | 0.93 | 0.92 | 0.87 | 0.00 | 0.95 | 0.92 | 0.95 | 0.94 |\n| ciliated columnar cell of tracheobronchial tree | 69 | 0.97 | 0.97 | 0.95 | 0.98 | 0.00 | 0.82 | 0.96 | 0.96 | 0.96 |\n| macrophage | 73 | 0.95 | 0.97 | 0.97 | 0.95 | 0.00 | 0.92 | 0.97 | 0.97 | 0.98 |\n| B cell | 66 | 0.96 | 0.97 | 0.99 | 0.97 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |\n| endothelial cell | 54 | 0.96 | 0.95 | 0.96 | 0.97 | 0.00 | 0.95 | 0.97 | 0.97 | 0.97 |\n| serous cell of epithelium of trachea | 24 | 0.62 | 0.15 | 0.71 | 0.72 | 0.00 | 0.28 | 0.48 | 0.48 | 0.74 |\n| plasma cell | 28 | 0.95 | 0.95 | 0.95 | 0.96 | 0.00 | 0.95 | 0.95 | 0.95 | 0.95 |\n| CD4-positive, alpha-beta T cell | 33 | 0.78 | 0.78 | 0.78 | 0.69 | 0.00 | 0.82 | 0.82 | 0.93 | 0.89 |\n| mucus secreting cell | 34 | 0.85 | 0.83 | 0.87 | 0.85 | 0.00 | 0.78 | 0.77 | 0.78 | 0.86 |\n| tracheal goblet cell | 34 | 0.87 | 0.70 | 0.91 | 0.88 | 0.00 | 0.70 | 0.90 | 0.88 | 0.91 |\n| connective tissue cell | 10 | 0.86 | 0.00 | 0.95 | 0.46 | 0.00 | 0.87 | 0.91 | 0.82 | 0.95 |\n| smooth muscle cell | 17 | 0.78 | 0.80 | 0.86 | 0.91 | 0.00 | 0.60 | 0.82 | 0.82 | 0.82 |\n| mast cell | 17 | 0.94 | 0.94 | 0.97 | 0.97 | 0.00 | 0.94 | 0.94 | 0.97 | 0.94 |\n| monocyte | 6 | 0.77 | 0.91 | 0.91 | 0.67 | 0.00 | 0.71 | 1.00 | 0.83 | 0.91 |\n| natural killer cell | 9 | 0.62 | 0.78 | 0.80 | 0.00 | 0.00 | 0.76 | 0.74 | 0.80 | 0.70 |\n| granulocyte | 5 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.12 | 0.47 | 0.36 | 0.33 |\n| mature NK T cell | 5 | 0.22 | 0.00 | 0.50 | 0.00 | 0.00 | 0.50 | 0.67 | 0.80 | 0.44 |\n| T cell | 2 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| ionocyte | 1 | 0.67 | 0.00 | 0.67 | 0.67 | 0.00 | 0.07 | 0.67 | 1.00 | 0.67 |\n| regulatory T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 |\n| intermediate monocyte | 1 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| innate lymphoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 9226 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.91 | 0.98 | 0.97 | 0.99 |\n| neutrophil | 4223 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 1.00 |\n| fibroblast | 1631 | 0.97 | 0.93 | 0.98 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 1076 | 0.88 | 0.91 | 0.94 | 0.90 | 0.00 | 0.95 | 0.98 | 0.99 | 0.96 |\n| ciliated columnar cell of tracheobronchial tree | 644 | 0.97 | 0.97 | 0.97 | 0.98 | 0.00 | 0.87 | 0.99 | 0.97 | 0.99 |\n| macrophage | 639 | 0.92 | 0.93 | 0.94 | 0.93 | 0.00 | 0.94 | 0.98 | 0.99 | 0.97 |\n| B cell | 561 | 0.96 | 0.96 | 0.97 | 0.97 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |\n| endothelial cell | 532 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| serous cell of epithelium of trachea | 302 | 0.79 | 0.01 | 0.87 | 0.83 | 0.00 | 0.51 | 0.79 | 0.70 | 0.93 |\n| plasma cell | 264 | 0.97 | 0.97 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| CD4-positive, alpha-beta T cell | 245 | 0.64 | 0.64 | 0.78 | 0.66 | 0.00 | 0.88 | 0.95 | 0.97 | 0.86 |\n| mucus secreting cell | 236 | 0.77 | 0.67 | 0.86 | 0.85 | 0.00 | 0.78 | 0.85 | 0.82 | 0.91 |\n| tracheal goblet cell | 198 | 0.81 | 0.51 | 0.90 | 0.91 | 0.00 | 0.60 | 0.91 | 0.86 | 0.96 |\n| connective tissue cell | 142 | 0.80 | 0.00 | 0.91 | 0.95 | 0.00 | 0.90 | 0.93 | 0.90 | 0.98 |\n| smooth muscle cell | 114 | 0.78 | 0.81 | 0.88 | 0.91 | 0.00 | 0.57 | 0.91 | 0.91 | 0.88 |\n| mast cell | 102 | 0.97 | 0.97 | 0.97 | 0.99 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |\n| monocyte | 75 | 0.60 | 0.62 | 0.74 | 0.58 | 0.00 | 0.79 | 0.95 | 0.97 | 0.88 |\n| natural killer cell | 55 | 0.63 | 0.60 | 0.72 | 0.35 | 0.00 | 0.79 | 0.92 | 0.90 | 0.93 |\n| granulocyte | 34 | 0.00 | 0.00 | 0.20 | 0.16 | 0.00 | 0.14 | 0.60 | 0.63 | 0.29 |\n| mature NK T cell | 32 | 0.28 | 0.06 | 0.69 | 0.44 | 0.00 | 0.65 | 0.93 | 0.98 | 0.92 |\n| T cell | 17 | 0.00 | 0.00 | 0.64 | 0.29 | 0.00 | 0.67 | 1.00 | 1.00 | 0.94 |\n| ionocyte | 17 | 0.78 | 0.00 | 0.88 | 0.94 | 0.00 | 0.13 | 1.00 | 1.00 | 0.94 |\n| regulatory T cell | 14 | 0.00 | 0.00 | 0.24 | 0.00 | 0.00 | 0.84 | 1.00 | 1.00 | 0.60 |\n| intermediate monocyte | 15 | 0.00 | 0.00 | 0.42 | 0.38 | 0.00 | 0.81 | 0.94 | 1.00 | 0.85 |\n| non-classical monocyte | 5 | 0.00 | 0.00 | 0.33 | 0.57 | 0.00 | 0.67 | 0.91 | 1.00 | 0.75 |\n| innate lymphoid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 0.80 | 1.00 |\n| plasmacytoid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |"
 }

celltypist.pkl

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:9811ff0395628308130f870d77c8db4b99a82fdf747b2117ba5e52a3b9ae6148
+oid sha256:4adb1c07cd51061e2eadd22412d0f1fe6f78f1b299f0a0a094ecde02d6e6fd89
 size 617893

faiss_index.faiss

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:54a44451065b6c95d2604c152a9f8b9b970dca636ee842f45a9ca39537a3457a
+oid sha256:7af3800fbd3d48e3ecb0821b6e2673b54a1b9c3b7f6ba3d462fe955aa0c29dc0
 size 4080645

harmony_knn_classifier.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:715cd1c5bdbab4bec9c41fc3c05bcc6c7f91a83b99c1df5674a569dfb89a9acb
+oid sha256:f924b348e8daaff3f3dcb15b6610d1ba02143eec227c4367bde5dac80ad9b84b
 size 6938507

scanvi/model.pt

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:ad21d3b89cb45a18fc5bb28c19977fcbe25190dfc3d391408a9c6d19870c65b1
+oid sha256:11e8d31813d6d64ca73169c222fee613424121a6f6d6b8bfa3c52ec794de9683
 size 11577004

scvi/model.pt

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:e8e77cbc7c17be0407874589e26e8f96252dbf4681d76b4f5a0e1cd881d863ff
+oid sha256:947416f9cdc7650988ba2664a768956d47a86d7b83d4506066a7bd1d85ffbb06
 size 10992573

scvi_knn_classifier.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:b2eab54c652084575f00f014ee66e3b108234466a18d04024daac42399d9eec5
+oid sha256:a1d15df35ba6cc2af9a758ea9c627f619bf4943e4a1daec96ffe3f580af8a503
 size 4490139

svm_classifier.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:dbc1cec0831cdf228435e90128fb10b08bc492f35a138529769a3c5be0e13a26
+oid sha256:71bf61039980e59cf7659be67c5cfa3a97b705fda86f67c1474f97511ea15709
 size 4427569

svm_classifier_cuml.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:421e072e60943bf1aaaa193b53b2932643eecf07e9344c2fd9b32d6dd61e8f0f
+oid sha256:522144e6f7417b264b99980d251ae467f5f681d7ee1276007e15ff75b317ec33
 size 478747

xgboost_classifier.model

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:ef5d88ec792688f03831d2296918085a9b98701ca4261a637ea4bbfbf022644e
-size 6787109
+oid sha256:cbff954d977d00296bea417d3fcd3b96814e07434529969d4a90c15c2247e594
+size 6723136