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import numpy as np
import io
import os
import time
from collections import defaultdict, deque
import datetime
import torch
import torch.distributed as dist
import torch.nn.functional as F
import torch.nn as nn
class DiceBCELoss(nn.Module):
def __init__(self, weight=None, size_average=True):
super(DiceBCELoss, self).__init__()
def forward(self, inputs, targets, smooth=1):
# comment out if your model contains a sigmoid or equivalent activation layer
inputs = F.sigmoid(inputs)
# flatten label and prediction tensors
inputs = inputs.view(-1)
targets = targets.view(-1)
intersection = (inputs * targets).sum()
dice_loss = 1 - (2.0 * intersection + smooth) / (
inputs.sum() + targets.sum() + smooth
)
BCE = F.binary_cross_entropy(inputs, targets, reduction="mean")
Dice_BCE = BCE + dice_loss
return Dice_BCE
class SmoothedValue(object):
"""Track a series of values and provide access to smoothed values over a
window or the global series average.
"""
def __init__(self, window_size=20, fmt=None):
if fmt is None:
fmt = "{median:.4f} ({global_avg:.4f})"
self.deque = deque(maxlen=window_size)
self.total = 0.0
self.count = 0
self.fmt = fmt
def update(self, value, n=1):
self.deque.append(value)
self.count += n
self.total += value * n
def synchronize_between_processes(self):
"""
Warning: does not synchronize the deque!
"""
if not is_dist_avail_and_initialized():
return
t = torch.tensor([self.count, self.total], dtype=torch.float64, device="cuda")
dist.barrier()
dist.all_reduce(t)
t = t.tolist()
self.count = int(t[0])
self.total = t[1]
@property
def median(self):
d = torch.tensor(list(self.deque))
return d.median().item()
@property
def avg(self):
d = torch.tensor(list(self.deque), dtype=torch.float32)
return d.mean().item()
@property
def global_avg(self):
if self.count == 0:
return self.total
else:
return self.total / self.count
@property
def max(self):
return max(self.deque)
@property
def value(self):
return self.deque[-1]
def __str__(self):
return self.fmt.format(
median=self.median,
avg=self.avg,
global_avg=self.global_avg,
max=self.max,
value=self.value,
)
class MetricLogger(object):
def __init__(self, delimiter="\t"):
self.meters = defaultdict(SmoothedValue)
self.delimiter = delimiter
def update(self, **kwargs):
for k, v in kwargs.items():
if isinstance(v, torch.Tensor):
v = v.item()
assert isinstance(v, (float, int))
self.meters[k].update(v)
def __getattr__(self, attr):
if attr in self.meters:
return self.meters[attr]
if attr in self.__dict__:
return self.__dict__[attr]
raise AttributeError(
"'{}' object has no attribute '{}'".format(type(self).__name__, attr)
)
def __str__(self):
loss_str = []
for name, meter in self.meters.items():
loss_str.append("{}: {}".format(name, str(meter)))
return self.delimiter.join(loss_str)
def global_avg(self):
loss_str = []
for name, meter in self.meters.items():
loss_str.append("{}: {:.4f}".format(name, meter.global_avg))
return self.delimiter.join(loss_str)
def synchronize_between_processes(self):
for meter in self.meters.values():
meter.synchronize_between_processes()
def add_meter(self, name, meter):
self.meters[name] = meter
def log_every(self, iterable, print_freq, header=None):
i = 0
if not header:
header = ""
start_time = time.time()
end = time.time()
iter_time = SmoothedValue(fmt="{avg:.4f}")
data_time = SmoothedValue(fmt="{avg:.4f}")
space_fmt = ":" + str(len(str(len(iterable)))) + "d"
log_msg = [
header,
"[{0" + space_fmt + "}/{1}]",
"eta: {eta}",
"{meters}",
"time: {time}",
"data: {data}",
]
if torch.cuda.is_available():
log_msg.append("max mem: {memory:.0f}")
log_msg = self.delimiter.join(log_msg)
MB = 1024.0 * 1024.0
for obj in iterable:
data_time.update(time.time() - end)
yield obj
iter_time.update(time.time() - end)
if i % print_freq == 0 or i == len(iterable) - 1:
eta_seconds = iter_time.global_avg * (len(iterable) - i)
eta_string = str(datetime.timedelta(seconds=int(eta_seconds)))
if torch.cuda.is_available():
print(
log_msg.format(
i,
len(iterable),
eta=eta_string,
meters=str(self),
time=str(iter_time),
data=str(data_time),
memory=torch.cuda.max_memory_allocated() / MB,
)
)
else:
print(
log_msg.format(
i,
len(iterable),
eta=eta_string,
meters=str(self),
time=str(iter_time),
data=str(data_time),
)
)
i += 1
end = time.time()
total_time = time.time() - start_time
total_time_str = str(datetime.timedelta(seconds=int(total_time)))
print(
"{} Total time: {} ({:.4f} s / it)".format(
header, total_time_str, total_time / len(iterable)
)
)
class AttrDict(dict):
def __init__(self, *args, **kwargs):
super(AttrDict, self).__init__(*args, **kwargs)
self.__dict__ = self
def compute_acc(logits, label, reduction="mean"):
ret = (torch.argmax(logits, dim=1) == label).float()
if reduction == "none":
return ret.detach()
elif reduction == "mean":
return ret.mean().item()
def compute_n_params(model, return_str=True):
tot = 0
for p in model.parameters():
w = 1
for x in p.shape:
w *= x
tot += w
if return_str:
if tot >= 1e6:
return "{:.1f}M".format(tot / 1e6)
else:
return "{:.1f}K".format(tot / 1e3)
else:
return tot
def setup_for_distributed(is_master):
"""
This function disables printing when not in master process
"""
import builtins as __builtin__
builtin_print = __builtin__.print
def print(*args, **kwargs):
force = kwargs.pop("force", False)
if is_master or force:
builtin_print(*args, **kwargs)
__builtin__.print = print
def is_dist_avail_and_initialized():
if not dist.is_available():
return False
if not dist.is_initialized():
return False
return True
def get_world_size():
if not is_dist_avail_and_initialized():
return 1
return dist.get_world_size()
def get_rank():
if not is_dist_avail_and_initialized():
return 0
return dist.get_rank()
def is_main_process():
return get_rank() == 0
def save_on_master(*args, **kwargs):
if is_main_process():
torch.save(*args, **kwargs)
def init_distributed_mode(args):
# os.environ['CUDA_VISIBLE_DEVICES'] = '0,1'
# args.local_rank = os.environ['LOCAL_RANK']
if "RANK" in os.environ and "WORLD_SIZE" in os.environ:
args.rank = int(os.environ["RANK"])
args.world_size = int(os.environ["WORLD_SIZE"])
args.local_rank = int(os.environ["LOCAL_RANK"])
elif "SLURM_PROCID" in os.environ:
args.rank = int(os.environ["SLURM_PROCID"])
args.local_rank = args.rank % torch.cuda.device_count()
else:
print("Not using distributed mode")
args.distributed = False
return
args.distributed = True
torch.cuda.set_device(args.local_rank)
args.dist_backend = "nccl"
print(
"| distributed init (rank {}): {}".format(args.rank, args.dist_url), flush=True
)
torch.distributed.init_process_group(
backend=args.dist_backend,
init_method=args.dist_url,
world_size=args.world_size,
rank=args.rank,
)
torch.distributed.barrier()
setup_for_distributed(args.rank == 0)
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