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{
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  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import numpy as np\n",
    "import torch\n",
    "import os\n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "from PIL import Image\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "import matplotlib.pyplot as plt"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "im_path = \"/media/ubuntu/New Volume/jay/fundus_images/archive/REFUGE/val/Masks/V0001.png\"\n",
    "img = torch.as_tensor(np.array(Image.open(im_path).convert(\"RGB\")))\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array([0, 1, 2], dtype=uint8)"
      ]
     },
     "execution_count": 8,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "np.unique(img[:,:,0])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "model_dict_path = \"./eval/cholec8k/svd_shiftscale_cholec_tal_focal075_1e-4.pth\"\n",
    "model_dict = torch.load(model_dict_path, map_location='cpu')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "keys = list(model_dict.keys())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
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       " 'mask_decoder.iou_token.weight',\n",
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       " 'mask_decoder.output_upscaling.3.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.0.layers.0.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.0.layers.0.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.0.layers.1.weight',\n",
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       " 'mask_decoder.output_hypernetworks_mlps.0.layers.2.weight',\n",
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       " 'mask_decoder.output_hypernetworks_mlps.1.layers.1.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.1.layers.1.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.1.layers.2.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.1.layers.2.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.2.layers.0.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.2.layers.0.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.2.layers.1.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.2.layers.1.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.2.layers.2.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.2.layers.2.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.3.layers.0.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.3.layers.0.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.3.layers.1.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.3.layers.1.bias',\n",
       " 'mask_decoder.output_hypernetworks_mlps.3.layers.2.weight',\n",
       " 'mask_decoder.output_hypernetworks_mlps.3.layers.2.bias',\n",
       " 'mask_decoder.iou_prediction_head.layers.0.weight',\n",
       " 'mask_decoder.iou_prediction_head.layers.0.bias',\n",
       " 'mask_decoder.iou_prediction_head.layers.1.weight',\n",
       " 'mask_decoder.iou_prediction_head.layers.1.bias',\n",
       " 'mask_decoder.iou_prediction_head.layers.2.weight',\n",
       " 'mask_decoder.iou_prediction_head.layers.2.bias',\n",
       " 'Text_Embedding_Affine.0.weight',\n",
       " 'Text_Embedding_Affine.0.bias',\n",
       " 'Text_Embedding_Affine.2.weight',\n",
       " 'Text_Embedding_Affine.2.bias',\n",
       " 'Text_Embedding_Affine.2.running_mean',\n",
       " 'Text_Embedding_Affine.2.running_var',\n",
       " 'Text_Embedding_Affine.2.num_batches_tracked']"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "keys"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "def basic_stats(key):\n",
    "    print('min: ', model_dict[key].min())\n",
    "    print('max: ', model_dict[key].max())\n",
    "    print('mean: ', model_dict[key].mean())\n",
    "    print('norm: ', np.linalg.norm(model_dict[key].numpy()))\n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "min:  tensor(0.)\n",
      "max:  tensor(0.)\n",
      "mean:  tensor(0.)\n",
      "norm:  0.0\n"
     ]
    }
   ],
   "source": [
    "basic_stats('mask_decoder.transformer.layers.0.mlp.lin1.trainable_shift')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'a.b.c.d'"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "a = \"a.b.c.d\"\n",
    "a.replace(\"c\",\"e\")\n",
    "a"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "import nibabel as nib\n",
    "import numpy as np\n",
    "import os"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['case0005_slice018.npz',\n",
       " 'case0027_slice043.npz',\n",
       " 'case0027_slice044.npz',\n",
       " 'case0027_slice045.npz',\n",
       " 'case0027_slice046.npz',\n",
       " 'case0027_slice047.npz',\n",
       " 'case0027_slice048.npz',\n",
       " 'case0027_slice049.npz',\n",
       " 'case0027_slice050.npz',\n",
       " 'case0027_slice051.npz',\n",
       " 'case0027_slice052.npz',\n",
       " 'case0027_slice053.npz',\n",
       " 'case0027_slice054.npz',\n",
       " 'case0027_slice055.npz',\n",
       " 'case0027_slice056.npz',\n",
       " 'case0027_slice057.npz',\n",
       " 'case0027_slice058.npz',\n",
       " 'case0027_slice059.npz',\n",
       " 'case0027_slice060.npz',\n",
       " 'case0027_slice061.npz',\n",
       " 'case0027_slice062.npz',\n",
       " 'case0027_slice063.npz',\n",
       " 'case0027_slice064.npz',\n",
       " 'case0027_slice065.npz',\n",
       " 'case0027_slice066.npz',\n",
       " 'case0027_slice067.npz',\n",
       " 'case0027_slice068.npz',\n",
       " 'case0010_slice080.npz',\n",
       " 'case0010_slice081.npz',\n",
       " 'case0010_slice082.npz',\n",
       " 'case0010_slice083.npz',\n",
       " 'case0010_slice084.npz']"
      ]
     },
     "execution_count": 18,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "os.listdir('/media/ubuntu/New Volume/jay/BTCV/train_npz')[18:50]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "# im = nib.load('/media/ubuntu/New Volume/jay/LiTS/images/1.nii')\n",
    "im = np.load('/media/ubuntu/New Volume/jay/BTCV/train_npz/case0005_slice000.npz')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "(512, 512)\n"
     ]
    }
   ],
   "source": [
    "list(im.keys())\n",
    "print(im['image'].shape)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import torch"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(tensor([0, 0, 1, 1]), tensor([0, 4, 3, 4]))"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "a = torch.Tensor([\n",
    "    [1,0,0,0,1],\n",
    "    [0,0,0,1,1]\n",
    "])\n",
    "torch.where(a==1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "tensor([[315., 581.],\n",
      "        [339., 340.]])\n"
     ]
    }
   ],
   "source": [
    "a = [[torch.tensor(315), torch.tensor(581)], [torch.tensor(339), torch.tensor(340)]]\n",
    "print(torch.Tensor(a))"
   ]
  }
 ],
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   "language": "python",
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