| class bedpewriter(): | |
| def __init__(self,file_path, resol, max_distance): | |
| self.f = open(file_path,'w') | |
| self.resol = resol | |
| self.max_distance = max_distance | |
| def write(self,chrom,x,y,prob): | |
| for i in range(len(x)): | |
| # if x[i] < y[i] and y[i]-x[i] > 11*self.resol and y[i] - x[i] < self.max_distance: | |
| if x[i] < y[i] and y[i] - x[i] < self.max_distance: | |
| self.f.write(chrom+'\t'+str(x[i])+'\t'+str(x[i]+self.resol) | |
| +'\t'+chrom+'\t'+str(y[i])+'\t'+str(y[i]+self.resol) | |
| +'\t'+str(prob[i])+'\n') |