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<?php |
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function load_experiment_info() { |
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global $dir,$task,$user,$setup; |
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global $evalset; |
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global $experiment; |
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if (array_key_exists("setup",$_POST)) { $setup = $_POST["setup"]; } |
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if (array_key_exists("setup",$_GET)) { $setup= $_GET["setup"]; } |
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$all_setup = file("setup"); |
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while (list($id,$line) = each($all_setup)) { |
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$info = explode(";",$line); |
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if ($info[0] == $setup) { |
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$user = $info[1]; |
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$task = $info[2]; |
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$dir = rtrim($info[3]); |
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} |
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} |
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if (file_exists($dir."/steps/new") || |
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file_exists($dir."/steps/1")) { |
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$topd = dir($dir."/steps"); |
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while (false !== ($run = $topd->read())) { |
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if (preg_match('/^([0-9]+)$/',$run,$match) |
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&& $run>0 |
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&& !file_exists("$dir/steps/$run/deleted.$run")) { |
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$d = dir($dir."/steps/$run"); |
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while (false !== ($entry = $d->read())) { |
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process_file_entry("$dir/steps/$run/",$entry); |
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} |
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} |
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} |
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} |
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else { |
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$d = dir($dir."/steps"); |
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while (false !== ($entry = $d->read())) { |
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process_file_entry($dir."/steps",$entry); |
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} |
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} |
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reset($experiment); |
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while (list($id,$info) = each($experiment)) { |
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if (file_exists($dir."/steps/new") || |
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file_exists($dir."/steps/$id")) { |
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$stat = stat("$dir/steps/$id/parameter.$id"); |
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} |
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else { |
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$stat = stat("$dir/steps/parameter.$id"); |
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} |
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$experiment[$id]->start = $stat[9]; |
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} |
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reset($experiment); |
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while (list($id,$info) = each($experiment)) { |
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if (file_exists("$dir/evaluation/report.$id")) { |
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$f = file("$dir/evaluation/report.$id"); |
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foreach ($f as $line_num => $line) { |
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if (preg_match('/^(.+): (.+)/',$line,$match)) { |
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$experiment[$id]->result[$match[1]] = $match[2]; |
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if (!$evalset || !array_key_exists($match[1],$evalset)) { |
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$evalset[$match[1]] = 0; |
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} |
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$evalset[$match[1]]++; |
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} |
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} |
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} |
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} |
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krsort($experiment); |
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uksort($evalset,"evalsetsort"); |
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} |
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function evalsetsort($a,$b) { |
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if ($a == "avg") { return -1; } |
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if ($b == "avg") { return 1; } |
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return strcmp($a,$b); |
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} |
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function load_parameter($run) { |
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global $dir; |
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if (file_exists($dir."/steps/new") || |
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file_exists($dir."/steps/$run")) { |
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$file = file("$dir/steps/$run/parameter.$run"); |
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} |
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else { |
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$file = file("$dir/steps/parameter.$run"); |
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} |
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while (list($i,$line) = each($file)) { |
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if (preg_match("/^(\S+) = (.+)$/",$line,$match)) { |
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$parameter[$match[1]] = $match[2]; |
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} |
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} |
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return $parameter; |
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} |
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function load_comment() { |
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global $comment; |
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$file = file("comment"); |
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while (list($i,$line) = each($file)) { |
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$line = chop($line); |
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$item = explode(";",$line,4); |
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$comment[$item[0]]->name = $item[1]; |
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} |
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} |
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function process_file_entry($dir,$entry) { |
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global $experiment; |
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if (preg_match('/running.(\d+)/',$entry,$match)) { |
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$stat = stat($dir."/".$entry); |
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$experiment[$match[1]]->end = $stat[9]; |
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} |
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else if (preg_match('/^([A-Z\-]+)_([^\.]+)\.(\d+)$/',$entry,$match)) { |
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$step = $match[1]."<BR>".$match[2]; |
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$run = $match[3]; |
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if ($run > 0 ) { |
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$file = $dir.$entry; |
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$stat = stat($file); |
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if (file_exists($file.".STDERR")) { $stat = stat($file.".STDERR"); } |
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if (file_exists($file.".STDOUT")) { $stat2 = stat($file.".STDOUT"); } |
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if ($stat2[9] > $stat[9]) { $stat = $stat2; } |
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$time = $stat[9]; |
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if (!$experiment || !array_key_exists($run,$experiment) || |
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!property_exists($experiment[$run],"last_step_time") || |
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$time > $experiment[$run]->last_step_time) { |
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$experiment[$run]->last_step_time = $time; |
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$experiment[$run]->last_step = $step; |
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} |
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} |
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} |
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} |
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function get_analysis_version($dir,$set,$id) { |
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global $analysis_version; |
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if ($analysis_version |
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&& array_key_exists($id,$analysis_version) |
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&& array_key_exists($set,$analysis_version[$id])) { |
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return $analysis_version[$id][$set]; |
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} |
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$analysis_version[$id][$set]["basic"] = 0; |
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$analysis_version[$id][$set]["biconcor"] = 0; |
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$analysis_version[$id][$set]["coverage"] = 0; |
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$analysis_version[$id][$set]["precision"] = 0; |
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$prefix = "$dir/evaluation/$set.analysis"; |
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if (file_exists("$prefix.$id/summary")) { |
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$analysis_version[$id][$set]["basic"] = $id; |
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} |
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if (file_exists("$prefix.$id/input-annotation")) { |
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$analysis_version[$id][$set]["coverage"] = $id; |
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} |
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if (file_exists("$prefix.$id/precision-by-input-word")) { |
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$analysis_version[$id][$set]["precision"] = $id; |
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} |
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if (file_exists("$dir/model/biconcor.$id")) { |
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$analysis_version[$id][$set]["biconcor"] = $id; |
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} |
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if (file_exists("$dir/steps/$id/re-use.$id")) { |
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$re_use = file("$dir/steps/$id/re-use.$id"); |
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foreach($re_use as $line) { |
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if (preg_match("/EVALUATION:(.+):analysis (\d+)/",$line,$match) && |
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$match[1] == $set && |
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file_exists("$prefix.$match[2]/summary")) { |
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$analysis_version[$id][$set]["basic"] = $match[2]; |
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} |
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else if (preg_match("/EVALUATION:(.+):analysis-coverage (\d+)/",$line,$match) && |
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$match[1] == $set && |
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file_exists("$prefix.$match[2]/input-annotation")) { |
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$analysis_version[$id][$set]["coverage"] = $match[2]; |
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} |
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else if (preg_match("/EVALUATION:(.+):analysis-precision (\d+)/",$line,$match) && |
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$match[1] == $set && |
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file_exists("$prefix.$match[2]/precision-by-input-word")) { |
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$analysis_version[$id][$set]["precision"] = $match[2]; |
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} |
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else if (preg_match("/TRAINING:build-biconcor (\d+)/",$line,$match) && |
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file_exists("$dir/model/biconcor.$match[1]")) { |
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$analysis_version[$id][$set]["biconcor"] = $match[1]; |
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} |
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} |
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} |
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if (file_exists("$dir/steps/$id/REPORTING_report.$id")) { |
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$report = file("$dir/steps/$id/REPORTING_report.$id.INFO"); |
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foreach ($report as $line) { |
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if (preg_match("/\# reuse run (\d+) for EVALUATION:(.+):analysis$/",$line,$match) && |
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$match[2] == $set) { |
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if (file_exists("$prefix.$match[1]/summary")) { |
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$analysis_version[$id][$set]["basic"] = $match[1]; |
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} |
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} |
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if (preg_match("/\# reuse run (\d+) for EVALUATION:(.+):analysis-coverage/",$line,$match) && |
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$match[2] == $set) { |
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if (file_exists("$prefix.$match[1]/input-annotation")) { |
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$analysis_version[$id][$set]["coverage"] = $match[1]; |
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} |
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} |
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if (preg_match("/\# reuse run (\d+) for EVALUATION:(.+):analysis-precision/",$line,$match) && |
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$match[2] == $set) { |
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if (file_exists("$prefix.$match[1]/precision-by-input-word")) { |
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$analysis_version[$id][$set]["precision"] = $match[1]; |
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} |
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} |
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if (preg_match("/\# reuse run (\d+) for TRAINING:biconcor/",$line,$match)){ |
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if (file_exists("$dir/model/biconcor.$match[1]")) { |
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$analysis_version[$id][$set]["biconcor"] = $match[1]; |
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} |
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} |
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} |
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} |
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return $analysis_version[$id][$set]; |
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} |
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function get_precision_analysis_version($dir,$set,$id) { |
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$version = get_analysis_version($dir,$set,$id); |
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return $version["precision"]; |
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} |
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function get_basic_analysis_version($dir,$set,$id) { |
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$version = get_analysis_version($dir,$set,$id); |
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return $version["basic"]; |
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} |
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function get_coverage_analysis_version($dir,$set,$id) { |
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$version = get_analysis_version($dir,$set,$id); |
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return $version["coverage"]; |
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} |
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function get_biconcor_version($dir,$set,$id) { |
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$version = get_analysis_version($dir,$set,$id); |
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return $version["biconcor"]; |
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} |
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function get_analysis_filename($dir,$set,$id,$type,$file) { |
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$version = get_analysis_version($dir,$set,$id); |
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return "$dir/evaluation/$set.analysis.".$version[$type]."/".$file; |
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} |
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function get_current_analysis_filename($type,$file) { |
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global $dir,$set,$id; |
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$version = get_analysis_version($dir,$set,$id); |
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return "$dir/evaluation/$set.analysis.".$version[$type]."/".$file; |
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} |
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function get_current_analysis_filename2($type,$file) { |
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global $dir,$set,$id2; |
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$version = get_analysis_version($dir,$set,$id2); |
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return "$dir/evaluation/$set.analysis.".$version[$type]."/".$file; |
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} |
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