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README.md
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@@ -57,7 +57,7 @@ Modality: rna
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| Metric | Training Value | Validation Value |
|
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|-------------------------|----------------|------------------|
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-
| Mean Absolute Error | 1.32 | 1.
|
61 |
| Pearson Correlation | 0.97 | 0.96 |
|
62 |
| Spearman Correlation | 0.90 | 0.90 |
|
63 |
| R² (R-Squared) | 0.89 | 0.88 |
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@@ -66,9 +66,9 @@ Modality: protein
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| Metric | Training Value | Validation Value |
|
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|-------------------------|----------------|------------------|
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-
| Mean Absolute Error | 1.46 | 1.
|
70 |
| Pearson Correlation | 0.47 | 0.48 |
|
71 |
-
| Spearman Correlation | 0.
|
72 |
| R² (R-Squared) | -0.62 | -0.62 |
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|
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@@ -85,16 +85,16 @@ Modality: rna
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| Mean Absolute Error | 3.33 |
|
86 |
| Pearson Correlation | 0.74 |
|
87 |
| Spearman Correlation | 0.88 |
|
88 |
-
| R² (R-Squared) | -0.
|
89 |
|
90 |
Modality: protein
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91 |
|
92 |
| Metric | Training Value |
|
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|-------------------------|----------------|
|
94 |
-
| Mean Absolute Error | 1.
|
95 |
| Pearson Correlation | 0.83 |
|
96 |
| Spearman Correlation | 0.84 |
|
97 |
-
| R² (R-Squared) | -1.
|
98 |
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99 |
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@@ -115,101 +115,101 @@ Modality: rna
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116 |
| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
|
117 |
| --- | --- | --- | --- | --- | --- | --- | --- |
|
118 |
-
| CD14+ Mono | 0.
|
119 |
-
| CD4+ T activated | 0.96 | 0.
|
120 |
-
| CD4+ T naive | 0.
|
121 |
-
| NK | 0.94 | 0.
|
122 |
-
| Reticulocyte | 0.
|
123 |
-
| Erythroblast | 0.96 | 0.54 | 0.
|
124 |
-
| Naive CD20+ B IGKC+ | 0.
|
125 |
-
| CD8+ T naive | 0.
|
126 |
-
| CD16+ Mono | 0.
|
127 |
-
| NK CD158e1+ | 0.
|
128 |
-
| Naive CD20+ B IGKC- | 0.
|
129 |
-
| G/M prog | 0.
|
130 |
-
| pDC | 0.92 | 0.
|
131 |
-
| HSC | 0.
|
132 |
-
| cDC2 | 0.
|
133 |
-
| Lymph prog | 0.
|
134 |
-
| Transitional B | 0.
|
135 |
-
| Proerythroblast | 0.
|
136 |
-
| CD8+ T CD57+ CD45RO+ | 0.
|
137 |
-
| Normoblast | 0.
|
138 |
-
| CD8+ T CD57+ CD45RA+ | 0.89 | 1.
|
139 |
-
| CD8+ T TIGIT+ CD45RO+ | 0.
|
140 |
-
| CD4+ T activated integrinB7+ | 0.92 |
|
141 |
-
| CD8+ T TIGIT+ CD45RA+ | 0.
|
142 |
-
| CD8+ T CD49f+ | 0.
|
143 |
-
| CD8+ T CD69+ CD45RO+ | 0.
|
144 |
-
| B1 B IGKC+ | 0.
|
145 |
-
| MAIT | 0.
|
146 |
-
| CD8+ T CD69+ CD45RA+ | 0.
|
147 |
-
| MK/E prog | 0.
|
148 |
-
| gdT CD158b+ | 0.
|
149 |
-
| B1 B IGKC- | 0.88 | 2.
|
150 |
-
| T reg | 0.87 | 2.
|
151 |
-
| ILC1 | 0.
|
152 |
-
| Plasma cell IGKC+ | 0.
|
153 |
-
| Plasma cell IGKC- | 0.
|
154 |
-
| ILC | 0.87 | 4.
|
155 |
-
| Plasmablast IGKC+ | 0.
|
156 |
-
| gdT TCRVD2+ | 0.
|
157 |
-
| Plasmablast IGKC- | 0.
|
158 |
-
| CD4+ T CD314+ CD45RA+ | 0.81 | 4.
|
159 |
-
| dnT | 0.
|
160 |
-
| CD8+ T naive CD127+ CD26- CD101- | 0.
|
161 |
-
| T prog cycling | 0.
|
162 |
-
| cDC1 | 0.
|
163 |
|
164 |
Modality: protein
|
165 |
|
166 |
| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
|
167 |
| --- | --- | --- | --- | --- | --- | --- | --- |
|
168 |
| CD14+ Mono | 0.92 | 0.38 | 0.99 | 0.99 | 0.24 | 0.14 | 21693.00 |
|
169 |
-
| CD4+ T activated | 0.92 | 0.
|
170 |
-
| CD4+ T naive | 0.92 | 0.19 | 0.99 | 0.97 | 0.12 | 0.
|
171 |
| NK | 0.92 | 0.21 | 0.98 | 0.98 | 0.17 | 0.14 | 5434.00 |
|
172 |
-
| Reticulocyte | 0.46 | 0.
|
173 |
| Erythroblast | 0.62 | 0.97 | 0.96 | 0.98 | 0.27 | 0.15 | 4039.00 |
|
174 |
| Naive CD20+ B IGKC+ | 0.92 | 0.31 | 0.99 | 0.99 | 0.36 | 0.13 | 3990.00 |
|
175 |
-
| CD8+ T naive | 0.92 | 0.
|
176 |
-
| CD16+ Mono |
|
177 |
-
| NK CD158e1+ | 0.92 | 0.28 | 0.98 | 0.98 | 0.74 | 0.
|
178 |
-
| Naive CD20+ B IGKC- | 0.92 | 0.
|
179 |
-
| G/M prog | 0.
|
180 |
| pDC | 1.00 | 0.26 | 0.98 | 0.96 | 0.92 | 0.93 | 1758.00 |
|
181 |
-
| HSC | 0.
|
182 |
| cDC2 | 0.92 | 0.31 | 0.98 | 0.98 | 1.00 | 0.95 | 1702.00 |
|
183 |
| Lymph prog | 0.92 | 0.34 | 0.97 | 0.98 | 0.85 | 0.85 | 1681.00 |
|
184 |
-
| Transitional B | 0.85 | 0.
|
185 |
-
| Proerythroblast | 0.77 | 0.
|
186 |
-
| CD8+ T CD57+ CD45RO+ | 0.
|
187 |
-
| Normoblast | 0.54 | 1.
|
188 |
-
| CD8+ T CD57+ CD45RA+ | 0.85 | 0.
|
189 |
-
| CD8+ T TIGIT+ CD45RO+ | 0.92 | 0.
|
190 |
-
| CD4+ T activated integrinB7+ | 0.92 | 0.
|
191 |
| CD8+ T TIGIT+ CD45RA+ | 0.92 | 0.25 | 0.99 | 0.97 | 1.00 | 0.99 | 1032.00 |
|
192 |
-
| CD8+ T CD49f+ | 0.
|
193 |
-
| CD8+ T CD69+ CD45RO+ |
|
194 |
-
| B1 B IGKC+ |
|
195 |
-
| MAIT | 0.92 | 0.
|
196 |
-
| CD8+ T CD69+ CD45RA+ |
|
197 |
-
| MK/E prog | 0.85 | 0.26 | 0.96 | 0.
|
198 |
-
| gdT CD158b+ | 0.85 | 0.36 | 0.96 | 0.97 | 0.99 | 0.
|
199 |
-
| B1 B IGKC- | 1.00 | 0.
|
200 |
-
| T reg | 0.77 | 0.26 | 0.98 | 0.97 | 0.99 | 0.
|
201 |
-
| ILC1 | 0.92 | 0.
|
202 |
-
| Plasma cell IGKC+ | 0.
|
203 |
-
| Plasma cell IGKC- | 0.
|
204 |
-
| ILC | 0.77 | 0.
|
205 |
-
| Plasmablast IGKC+ | 0.92 | 0.
|
206 |
-
| gdT TCRVD2+ | 0.85 | 0.
|
207 |
-
| Plasmablast IGKC- | 0.92 | 0.
|
208 |
-
| CD4+ T CD314+ CD45RA+ | 0.
|
209 |
-
| dnT | 0.92 | 0.
|
210 |
-
| CD8+ T naive CD127+ CD26- CD101- | 0.69 | 0.
|
211 |
-
| T prog cycling | 0.
|
212 |
-
| cDC1 | 0.
|
213 |
|
214 |
|
215 |
|
|
|
57 |
|
58 |
| Metric | Training Value | Validation Value |
|
59 |
|-------------------------|----------------|------------------|
|
60 |
+
| Mean Absolute Error | 1.32 | 1.31 |
|
61 |
| Pearson Correlation | 0.97 | 0.96 |
|
62 |
| Spearman Correlation | 0.90 | 0.90 |
|
63 |
| R² (R-Squared) | 0.89 | 0.88 |
|
|
|
66 |
|
67 |
| Metric | Training Value | Validation Value |
|
68 |
|-------------------------|----------------|------------------|
|
69 |
+
| Mean Absolute Error | 1.46 | 1.42 |
|
70 |
| Pearson Correlation | 0.47 | 0.48 |
|
71 |
+
| Spearman Correlation | 0.69 | 0.69 |
|
72 |
| R² (R-Squared) | -0.62 | -0.62 |
|
73 |
|
74 |
|
|
|
85 |
| Mean Absolute Error | 3.33 |
|
86 |
| Pearson Correlation | 0.74 |
|
87 |
| Spearman Correlation | 0.88 |
|
88 |
+
| R² (R-Squared) | -0.93 |
|
89 |
|
90 |
Modality: protein
|
91 |
|
92 |
| Metric | Training Value |
|
93 |
|-------------------------|----------------|
|
94 |
+
| Mean Absolute Error | 1.55 |
|
95 |
| Pearson Correlation | 0.83 |
|
96 |
| Spearman Correlation | 0.84 |
|
97 |
+
| R² (R-Squared) | -1.43 |
|
98 |
|
99 |
|
100 |
|
|
|
115 |
|
116 |
| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
|
117 |
| --- | --- | --- | --- | --- | --- | --- | --- |
|
118 |
+
| CD14+ Mono | 0.96 | 0.17 | 0.99 | 1.00 | 0.13 | 0.02 | 21693.00 |
|
119 |
+
| CD4+ T activated | 0.96 | 0.35 | 0.84 | 0.99 | 0.09 | 0.02 | 6966.00 |
|
120 |
+
| CD4+ T naive | 0.97 | 0.55 | 0.69 | 0.98 | 0.10 | 0.02 | 5897.00 |
|
121 |
+
| NK | 0.94 | 0.44 | 0.76 | 0.98 | 0.07 | 0.02 | 5434.00 |
|
122 |
+
| Reticulocyte | 0.96 | 1.95 | 0.60 | 0.80 | 0.33 | 0.03 | 4272.00 |
|
123 |
+
| Erythroblast | 0.96 | 0.54 | 0.86 | 0.99 | 0.20 | 0.03 | 4039.00 |
|
124 |
+
| Naive CD20+ B IGKC+ | 0.98 | 0.68 | 0.67 | 0.98 | 0.07 | 0.02 | 3990.00 |
|
125 |
+
| CD8+ T naive | 0.95 | 0.67 | 0.64 | 0.98 | 0.07 | 0.02 | 3107.00 |
|
126 |
+
| CD16+ Mono | 0.91 | 0.76 | 0.66 | 0.98 | 0.05 | 0.02 | 2635.00 |
|
127 |
+
| NK CD158e1+ | 0.95 | 1.19 | 0.61 | 0.95 | 0.08 | 0.02 | 2167.00 |
|
128 |
+
| Naive CD20+ B IGKC- | 0.96 | 1.38 | 0.60 | 0.96 | 0.10 | 0.02 | 1979.00 |
|
129 |
+
| G/M prog | 0.88 | 0.36 | 0.80 | 0.98 | 0.01 | 0.01 | 1881.00 |
|
130 |
+
| pDC | 0.92 | 0.92 | 0.68 | 0.98 | 0.05 | 0.02 | 1758.00 |
|
131 |
+
| HSC | 0.91 | 0.42 | 0.75 | 0.99 | 0.03 | 0.02 | 1703.00 |
|
132 |
+
| cDC2 | 0.88 | 0.36 | 0.79 | 0.98 | 0.01 | 0.02 | 1702.00 |
|
133 |
+
| Lymph prog | 0.93 | 0.49 | 0.78 | 0.99 | 0.04 | 0.02 | 1681.00 |
|
134 |
+
| Transitional B | 0.96 | 1.40 | 0.64 | 0.96 | 0.08 | 0.02 | 1575.00 |
|
135 |
+
| Proerythroblast | 0.87 | 0.43 | 0.85 | 0.99 | 0.07 | 0.02 | 1512.00 |
|
136 |
+
| CD8+ T CD57+ CD45RO+ | 0.93 | 1.82 | 0.61 | 0.95 | 0.10 | 0.02 | 1470.00 |
|
137 |
+
| Normoblast | 0.96 | 2.64 | 0.63 | 0.85 | 0.32 | 0.03 | 1435.00 |
|
138 |
+
| CD8+ T CD57+ CD45RA+ | 0.89 | 1.55 | 0.57 | 0.93 | 0.07 | 0.02 | 1303.00 |
|
139 |
+
| CD8+ T TIGIT+ CD45RO+ | 0.91 | 1.80 | 0.56 | 0.91 | 0.09 | 0.02 | 1160.00 |
|
140 |
+
| CD4+ T activated integrinB7+ | 0.92 | 2.05 | 0.53 | 0.92 | 0.13 | 0.02 | 1056.00 |
|
141 |
+
| CD8+ T TIGIT+ CD45RA+ | 0.92 | 2.34 | 0.53 | 0.90 | 0.16 | 0.02 | 1032.00 |
|
142 |
+
| CD8+ T CD49f+ | 0.92 | 1.83 | 0.56 | 0.92 | 0.09 | 0.02 | 912.00 |
|
143 |
+
| CD8+ T CD69+ CD45RO+ | 0.90 | 2.42 | 0.57 | 0.90 | 0.14 | 0.02 | 897.00 |
|
144 |
+
| B1 B IGKC+ | 0.89 | 2.12 | 0.62 | 0.92 | 0.15 | 0.01 | 820.00 |
|
145 |
+
| MAIT | 0.90 | 2.18 | 0.57 | 0.91 | 0.13 | 0.02 | 756.00 |
|
146 |
+
| CD8+ T CD69+ CD45RA+ | 0.91 | 2.66 | 0.56 | 0.89 | 0.19 | 0.02 | 740.00 |
|
147 |
+
| MK/E prog | 0.90 | 0.80 | 0.67 | 0.98 | 0.04 | 0.02 | 690.00 |
|
148 |
+
| gdT CD158b+ | 0.89 | 2.06 | 0.58 | 0.90 | 0.12 | 0.02 | 674.00 |
|
149 |
+
| B1 B IGKC- | 0.88 | 2.31 | 0.63 | 0.91 | 0.16 | 0.02 | 613.00 |
|
150 |
+
| T reg | 0.87 | 2.33 | 0.55 | 0.87 | 0.12 | 0.01 | 609.00 |
|
151 |
+
| ILC1 | 0.89 | 2.68 | 0.51 | 0.85 | 0.18 | 0.02 | 552.00 |
|
152 |
+
| Plasma cell IGKC+ | 0.82 | 2.41 | 0.44 | 0.82 | 0.19 | 0.01 | 288.00 |
|
153 |
+
| Plasma cell IGKC- | 0.88 | 3.00 | 0.50 | 0.81 | 0.20 | 0.01 | 239.00 |
|
154 |
+
| ILC | 0.87 | 4.29 | 0.59 | 0.73 | 0.28 | 0.02 | 238.00 |
|
155 |
+
| Plasmablast IGKC+ | 0.84 | 3.16 | 0.53 | 0.84 | 0.21 | 0.01 | 232.00 |
|
156 |
+
| gdT TCRVD2+ | 0.84 | 3.82 | 0.56 | 0.75 | 0.22 | 0.01 | 191.00 |
|
157 |
+
| Plasmablast IGKC- | 0.83 | 4.08 | 0.54 | 0.78 | 0.24 | 0.02 | 130.00 |
|
158 |
+
| CD4+ T CD314+ CD45RA+ | 0.81 | 4.40 | 0.62 | 0.73 | 0.22 | 0.01 | 93.00 |
|
159 |
+
| dnT | 0.73 | 5.84 | 0.53 | 0.52 | 0.35 | 0.02 | 56.00 |
|
160 |
+
| CD8+ T naive CD127+ CD26- CD101- | 0.77 | 5.38 | 0.57 | 0.60 | 0.29 | 0.02 | 42.00 |
|
161 |
+
| T prog cycling | 0.65 | 4.82 | 0.65 | 0.73 | 0.26 | 0.02 | 24.00 |
|
162 |
+
| cDC1 | 0.65 | 5.83 | 0.58 | 0.57 | 0.28 | 0.02 | 18.00 |
|
163 |
|
164 |
Modality: protein
|
165 |
|
166 |
| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
|
167 |
| --- | --- | --- | --- | --- | --- | --- | --- |
|
168 |
| CD14+ Mono | 0.92 | 0.38 | 0.99 | 0.99 | 0.24 | 0.14 | 21693.00 |
|
169 |
+
| CD4+ T activated | 0.92 | 0.23 | 0.99 | 0.98 | 0.24 | 0.14 | 6966.00 |
|
170 |
+
| CD4+ T naive | 0.92 | 0.19 | 0.99 | 0.97 | 0.12 | 0.13 | 5897.00 |
|
171 |
| NK | 0.92 | 0.21 | 0.98 | 0.98 | 0.17 | 0.14 | 5434.00 |
|
172 |
+
| Reticulocyte | 0.46 | 0.91 | 0.95 | 0.98 | 0.29 | 0.16 | 4272.00 |
|
173 |
| Erythroblast | 0.62 | 0.97 | 0.96 | 0.98 | 0.27 | 0.15 | 4039.00 |
|
174 |
| Naive CD20+ B IGKC+ | 0.92 | 0.31 | 0.99 | 0.99 | 0.36 | 0.13 | 3990.00 |
|
175 |
+
| CD8+ T naive | 0.92 | 0.24 | 0.98 | 0.98 | 0.64 | 0.24 | 3107.00 |
|
176 |
+
| CD16+ Mono | 0.92 | 0.24 | 0.99 | 0.99 | 0.76 | 0.32 | 2635.00 |
|
177 |
+
| NK CD158e1+ | 0.92 | 0.28 | 0.98 | 0.98 | 0.74 | 0.44 | 2167.00 |
|
178 |
+
| Naive CD20+ B IGKC- | 0.92 | 0.35 | 0.99 | 0.99 | 0.79 | 0.38 | 1979.00 |
|
179 |
+
| G/M prog | 0.92 | 0.33 | 0.98 | 0.96 | 0.92 | 0.92 | 1881.00 |
|
180 |
| pDC | 1.00 | 0.26 | 0.98 | 0.96 | 0.92 | 0.93 | 1758.00 |
|
181 |
+
| HSC | 0.85 | 0.35 | 0.97 | 0.95 | 0.54 | 0.57 | 1703.00 |
|
182 |
| cDC2 | 0.92 | 0.31 | 0.98 | 0.98 | 1.00 | 0.95 | 1702.00 |
|
183 |
| Lymph prog | 0.92 | 0.34 | 0.97 | 0.98 | 0.85 | 0.85 | 1681.00 |
|
184 |
+
| Transitional B | 0.85 | 0.54 | 0.97 | 0.98 | 0.77 | 0.79 | 1575.00 |
|
185 |
+
| Proerythroblast | 0.77 | 0.69 | 0.94 | 0.97 | 0.77 | 0.79 | 1512.00 |
|
186 |
+
| CD8+ T CD57+ CD45RO+ | 0.92 | 0.49 | 0.97 | 0.97 | 0.94 | 0.52 | 1470.00 |
|
187 |
+
| Normoblast | 0.54 | 1.01 | 0.95 | 0.97 | 0.78 | 0.64 | 1435.00 |
|
188 |
+
| CD8+ T CD57+ CD45RA+ | 0.85 | 0.31 | 0.98 | 0.98 | 0.99 | 0.96 | 1303.00 |
|
189 |
+
| CD8+ T TIGIT+ CD45RO+ | 0.92 | 0.25 | 0.99 | 0.97 | 0.85 | 0.86 | 1160.00 |
|
190 |
+
| CD4+ T activated integrinB7+ | 0.92 | 0.30 | 0.98 | 0.96 | 0.99 | 0.96 | 1056.00 |
|
191 |
| CD8+ T TIGIT+ CD45RA+ | 0.92 | 0.25 | 0.99 | 0.97 | 1.00 | 0.99 | 1032.00 |
|
192 |
+
| CD8+ T CD49f+ | 0.92 | 0.22 | 0.98 | 0.96 | 0.99 | 0.96 | 912.00 |
|
193 |
+
| CD8+ T CD69+ CD45RO+ | 0.92 | 0.25 | 0.98 | 0.98 | 1.00 | 0.99 | 897.00 |
|
194 |
+
| B1 B IGKC+ | 0.92 | 0.34 | 0.98 | 0.97 | 1.00 | 0.99 | 820.00 |
|
195 |
+
| MAIT | 0.92 | 0.28 | 0.98 | 0.98 | 0.99 | 0.94 | 756.00 |
|
196 |
+
| CD8+ T CD69+ CD45RA+ | 1.00 | 0.23 | 0.98 | 0.98 | 1.00 | 1.00 | 740.00 |
|
197 |
+
| MK/E prog | 0.85 | 0.26 | 0.96 | 0.96 | 0.53 | 0.46 | 690.00 |
|
198 |
+
| gdT CD158b+ | 0.85 | 0.36 | 0.96 | 0.97 | 0.99 | 0.92 | 674.00 |
|
199 |
+
| B1 B IGKC- | 1.00 | 0.37 | 0.98 | 0.97 | 1.00 | 1.00 | 613.00 |
|
200 |
+
| T reg | 0.77 | 0.26 | 0.98 | 0.97 | 0.99 | 0.93 | 609.00 |
|
201 |
+
| ILC1 | 0.92 | 0.23 | 0.98 | 0.96 | 1.00 | 0.98 | 552.00 |
|
202 |
+
| Plasma cell IGKC+ | 0.77 | 0.31 | 0.96 | 0.96 | 0.91 | 0.85 | 288.00 |
|
203 |
+
| Plasma cell IGKC- | 0.92 | 0.25 | 0.96 | 0.97 | 0.92 | 0.92 | 239.00 |
|
204 |
+
| ILC | 0.77 | 0.35 | 0.97 | 0.96 | 0.99 | 0.92 | 238.00 |
|
205 |
+
| Plasmablast IGKC+ | 0.92 | 0.25 | 0.96 | 0.97 | 0.77 | 0.74 | 232.00 |
|
206 |
+
| gdT TCRVD2+ | 0.85 | 0.32 | 0.94 | 0.91 | 0.99 | 0.92 | 191.00 |
|
207 |
+
| Plasmablast IGKC- | 0.92 | 0.28 | 0.95 | 0.93 | 0.85 | 0.85 | 130.00 |
|
208 |
+
| CD4+ T CD314+ CD45RA+ | 0.69 | 0.77 | 0.94 | 0.93 | 0.98 | 0.86 | 93.00 |
|
209 |
+
| dnT | 0.92 | 0.42 | 0.90 | 0.87 | 0.68 | 0.55 | 56.00 |
|
210 |
+
| CD8+ T naive CD127+ CD26- CD101- | 0.69 | 0.55 | 0.92 | 0.88 | 0.98 | 0.80 | 42.00 |
|
211 |
+
| T prog cycling | 0.69 | 0.63 | 0.86 | 0.79 | 0.51 | 0.60 | 24.00 |
|
212 |
+
| cDC1 | 0.38 | 0.64 | 0.80 | 0.74 | 0.59 | 0.55 | 18.00 |
|
213 |
|
214 |
|
215 |
|