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adata.h5ad

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 version https://git-lfs.github.com/spec/v1
-oid sha256:6f8cc88053d6ebc2d2928c49f70105e411de56ca783ad5c7e018c7678690c4bb
-size 796517536
+oid sha256:367ed771329a86262c8e033c38559a1cd36397fd844c633c691e6973d43ab429
+size 798864584

metrics.json

@@ -1,5 +1,5 @@
 {
     "cell_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 1.43   |\n| Pearson Correlation | 0.93  |\n| Spearman Correlation | 0.85 |\n| R\u00b2 (R-Squared) | 0.85  |",
-    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 6.59   |\n| Pearson Correlation | 0.85  |\n| Spearman Correlation | 0.98 |\n| R\u00b2 (R-Squared) | 0.58  |",
-    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| respiratory basal cell | 0.98 | 0.29 | 0.91 | 0.99 | 0.28 | 0.98 | 80113.00 |\n| alveolar macrophage | 0.98 | 0.24 | 0.95 | 0.99 | 0.27 | 0.98 | 78816.00 |\n| type II pneumocyte | 0.96 | 0.27 | 0.91 | 0.98 | 0.20 | 0.99 | 62405.00 |\n| club cell | 0.93 | 0.58 | 0.82 | 0.98 | 0.17 | 0.97 | 36023.00 |\n| nasal mucosa goblet cell | 0.97 | 0.66 | 0.81 | 0.98 | 0.21 | 0.98 | 35833.00 |\n| ciliated columnar cell of tracheobronchial tree | 0.96 | 0.28 | 0.94 | 0.99 | 0.26 | 0.98 | 35225.00 |\n| CD8-positive, alpha-beta T cell | 0.95 | 0.33 | 0.90 | 0.98 | 0.30 | 0.97 | 29074.00 |\n| elicited macrophage | 0.96 | 0.43 | 0.88 | 0.99 | 0.30 | 0.97 | 28223.00 |\n| capillary endothelial cell | 0.98 | 0.67 | 0.83 | 0.96 | 0.28 | 0.99 | 23205.00 |\n| CD4-positive, alpha-beta T cell | 0.95 | 0.48 | 0.85 | 0.96 | 0.30 | 0.97 | 21285.00 |\n| classical monocyte | 0.94 | 0.46 | 0.82 | 0.97 | 0.28 | 0.96 | 17695.00 |\n| natural killer cell | 0.96 | 0.63 | 0.83 | 0.96 | 0.29 | 0.97 | 16978.00 |\n| vein endothelial cell | 0.95 | 0.70 | 0.79 | 0.95 | 0.26 | 0.96 | 12975.00 |\n| alveolar type 2 fibroblast cell | 0.92 | 0.71 | 0.81 | 0.97 | 0.27 | 0.97 | 10321.00 |\n| CD1c-positive myeloid dendritic cell | 0.93 | 0.62 | 0.74 | 0.96 | 0.33 | 0.96 | 9133.00 |\n| non-classical monocyte | 0.93 | 0.76 | 0.79 | 0.96 | 0.32 | 0.97 | 8834.00 |\n| type I pneumocyte | 0.95 | 1.27 | 0.67 | 0.88 | 0.18 | 0.95 | 7937.00 |\n| pulmonary artery endothelial cell | 0.94 | 1.10 | 0.75 | 0.94 | 0.28 | 0.97 | 7391.00 |\n| mast cell | 0.92 | 0.68 | 0.77 | 0.94 | 0.22 | 0.95 | 6623.00 |\n| multi-ciliated epithelial cell | 0.90 | 1.38 | 0.75 | 0.94 | 0.30 | 0.97 | 5873.00 |\n| alveolar type 1 fibroblast cell | 0.95 | 1.45 | 0.73 | 0.93 | 0.28 | 0.96 | 5182.00 |\n| lung macrophage | 0.92 | 1.31 | 0.73 | 0.93 | 0.32 | 0.95 | 4805.00 |\n| respiratory hillock cell | 0.93 | 1.47 | 0.73 | 0.95 | 0.28 | 0.96 | 4600.00 |\n| endothelial cell of lymphatic vessel | 0.92 | 1.05 | 0.68 | 0.93 | 0.24 | 0.95 | 4595.00 |\n| B cell | 0.94 | 1.38 | 0.60 | 0.90 | 0.27 | 0.96 | 4511.00 |\n| epithelial cell of lower respiratory tract | 0.94 | 1.08 | 0.61 | 0.89 | 0.16 | 0.95 | 4393.00 |\n| lung pericyte | 0.94 | 2.56 | 0.66 | 0.87 | 0.23 | 0.94 | 3032.00 |\n| tracheobronchial smooth muscle cell | 0.92 | 1.42 | 0.72 | 0.90 | 0.25 | 0.94 | 2996.00 |\n| plasma cell | 0.81 | 1.30 | 0.64 | 0.85 | 0.17 | 0.94 | 1773.00 |\n| bronchial goblet cell | 0.93 | 1.78 | 0.66 | 0.91 | 0.21 | 0.93 | 1670.00 |\n| bronchus fibroblast of lung | 0.91 | 2.06 | 0.68 | 0.89 | 0.28 | 0.93 | 1573.00 |\n| serous secreting cell | 0.91 | 5.05 | 0.59 | 0.71 | 0.14 | 0.98 | 1472.00 |\n| epithelial cell of alveolus of lung | 0.93 | 2.37 | 0.56 | 0.84 | 0.22 | 0.91 | 1440.00 |\n| tracheobronchial serous cell | 0.83 | 3.61 | 0.55 | 0.68 | 0.11 | 0.96 | 1417.00 |\n| acinar cell | 0.88 | 1.97 | 0.70 | 0.91 | 0.23 | 0.93 | 1274.00 |\n| tracheobronchial goblet cell | 0.87 | 4.40 | 0.57 | 0.72 | 0.12 | 0.97 | 968.00 |\n| myofibroblast cell | 0.77 | 3.53 | 0.65 | 0.83 | 0.32 | 0.92 | 716.00 |\n| ionocyte | 0.84 | 3.34 | 0.64 | 0.80 | 0.30 | 0.87 | 561.00 |\n| smooth muscle cell | 0.87 | 3.11 | 0.64 | 0.85 | 0.34 | 0.91 | 556.00 |\n| plasmacytoid dendritic cell | 0.90 | 4.16 | 0.53 | 0.72 | 0.30 | 0.90 | 552.00 |\n| mucus secreting cell | 0.86 | 4.32 | 0.59 | 0.69 | 0.24 | 0.94 | 537.00 |\n| T cell | 0.89 | 2.78 | 0.57 | 0.83 | 0.39 | 0.93 | 500.00 |\n| stromal cell | 0.79 | 5.41 | 0.58 | 0.70 | 0.24 | 0.91 | 335.00 |\n| conventional dendritic cell | 0.73 | 4.27 | 0.53 | 0.73 | 0.37 | 0.90 | 322.00 |\n| dendritic cell | 0.73 | 4.49 | 0.49 | 0.74 | 0.34 | 0.85 | 312.00 |\n| fibroblast | 0.77 | 3.60 | 0.64 | 0.81 | 0.40 | 0.91 | 276.00 |\n| mesothelial cell | 0.76 | 4.31 | 0.54 | 0.71 | 0.38 | 0.87 | 230.00 |\n| brush cell of trachebronchial tree | 0.62 | 4.85 | 0.60 | 0.74 | 0.36 | 0.83 | 165.00 |\n| lung neuroendocrine cell | 0.77 | 4.35 | 0.57 | 0.70 | 0.40 | 0.86 | 159.00 |\n| hematopoietic stem cell | 0.40 | 6.97 | 0.50 | 0.58 | 0.37 | 0.74 | 60.00 |"
+    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 6.25   |\n| Pearson Correlation | 0.88  |\n| Spearman Correlation | 0.98 |\n| R\u00b2 (R-Squared) | 0.66  |",
+    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| respiratory basal cell | 0.98 | 0.25 | 0.94 | 0.99 | 0.34 | 0.04 | 80113.00 |\n| alveolar macrophage | 0.98 | 0.23 | 0.95 | 0.99 | 0.34 | 0.04 | 78816.00 |\n| type II pneumocyte | 0.96 | 0.29 | 0.89 | 0.98 | 0.34 | 0.05 | 62405.00 |\n| club cell | 0.94 | 0.55 | 0.83 | 0.97 | 0.34 | 0.05 | 36023.00 |\n| nasal mucosa goblet cell | 0.97 | 0.65 | 0.81 | 0.97 | 0.34 | 0.05 | 35833.00 |\n| ciliated columnar cell of tracheobronchial tree | 0.97 | 0.23 | 0.97 | 0.99 | 0.34 | 0.05 | 35225.00 |\n| CD8-positive, alpha-beta T cell | 0.95 | 0.35 | 0.89 | 0.98 | 0.34 | 0.05 | 29074.00 |\n| elicited macrophage | 0.96 | 0.46 | 0.85 | 0.98 | 0.34 | 0.05 | 28223.00 |\n| capillary endothelial cell | 0.98 | 0.73 | 0.82 | 0.96 | 0.34 | 0.05 | 23205.00 |\n| CD4-positive, alpha-beta T cell | 0.96 | 0.43 | 0.89 | 0.97 | 0.34 | 0.05 | 21285.00 |\n| classical monocyte | 0.94 | 0.46 | 0.82 | 0.97 | 0.31 | 0.04 | 17695.00 |\n| natural killer cell | 0.96 | 0.61 | 0.83 | 0.96 | 0.34 | 0.05 | 16978.00 |\n| vein endothelial cell | 0.95 | 0.73 | 0.77 | 0.95 | 0.31 | 0.05 | 12975.00 |\n| alveolar type 2 fibroblast cell | 0.93 | 0.60 | 0.85 | 0.97 | 0.28 | 0.04 | 10321.00 |\n| CD1c-positive myeloid dendritic cell | 0.93 | 0.62 | 0.71 | 0.95 | 0.21 | 0.04 | 9133.00 |\n| non-classical monocyte | 0.93 | 0.76 | 0.78 | 0.96 | 0.26 | 0.04 | 8834.00 |\n| type I pneumocyte | 0.95 | 1.27 | 0.66 | 0.88 | 0.34 | 0.04 | 7937.00 |\n| pulmonary artery endothelial cell | 0.96 | 1.24 | 0.71 | 0.93 | 0.29 | 0.04 | 7391.00 |\n| mast cell | 0.93 | 0.72 | 0.75 | 0.94 | 0.25 | 0.04 | 6623.00 |\n| multi-ciliated epithelial cell | 0.88 | 1.48 | 0.72 | 0.94 | 0.28 | 0.04 | 5873.00 |\n| alveolar type 1 fibroblast cell | 0.96 | 1.48 | 0.70 | 0.92 | 0.24 | 0.04 | 5182.00 |\n| lung macrophage | 0.93 | 1.40 | 0.71 | 0.93 | 0.21 | 0.03 | 4805.00 |\n| respiratory hillock cell | 0.91 | 1.48 | 0.73 | 0.95 | 0.26 | 0.04 | 4600.00 |\n| endothelial cell of lymphatic vessel | 0.93 | 1.15 | 0.64 | 0.92 | 0.21 | 0.04 | 4595.00 |\n| B cell | 0.92 | 1.33 | 0.63 | 0.89 | 0.22 | 0.04 | 4511.00 |\n| epithelial cell of lower respiratory tract | 0.94 | 1.14 | 0.57 | 0.88 | 0.31 | 0.04 | 4393.00 |\n| lung pericyte | 0.94 | 2.59 | 0.65 | 0.87 | 0.26 | 0.04 | 3032.00 |\n| tracheobronchial smooth muscle cell | 0.93 | 1.55 | 0.68 | 0.90 | 0.17 | 0.03 | 2996.00 |\n| plasma cell | 0.80 | 1.32 | 0.63 | 0.85 | 0.16 | 0.03 | 1773.00 |\n| bronchial goblet cell | 0.93 | 1.53 | 0.73 | 0.93 | 0.19 | 0.03 | 1670.00 |\n| bronchus fibroblast of lung | 0.89 | 2.13 | 0.68 | 0.87 | 0.15 | 0.04 | 1573.00 |\n| serous secreting cell | 0.91 | 5.12 | 0.58 | 0.70 | 0.37 | 0.04 | 1472.00 |\n| epithelial cell of alveolus of lung | 0.93 | 2.34 | 0.57 | 0.84 | 0.19 | 0.04 | 1440.00 |\n| tracheobronchial serous cell | 0.81 | 3.34 | 0.59 | 0.70 | 0.38 | 0.04 | 1417.00 |\n| acinar cell | 0.88 | 1.98 | 0.69 | 0.91 | 0.20 | 0.04 | 1274.00 |\n| tracheobronchial goblet cell | 0.87 | 4.29 | 0.58 | 0.73 | 0.36 | 0.04 | 968.00 |\n| myofibroblast cell | 0.79 | 3.65 | 0.64 | 0.83 | 0.23 | 0.04 | 716.00 |\n| ionocyte | 0.85 | 3.36 | 0.64 | 0.79 | 0.25 | 0.03 | 561.00 |\n| smooth muscle cell | 0.84 | 3.10 | 0.64 | 0.85 | 0.22 | 0.03 | 556.00 |\n| plasmacytoid dendritic cell | 0.89 | 4.15 | 0.52 | 0.73 | 0.33 | 0.04 | 552.00 |\n| mucus secreting cell | 0.84 | 4.46 | 0.58 | 0.69 | 0.29 | 0.03 | 537.00 |\n| T cell | 0.91 | 2.85 | 0.57 | 0.83 | 0.25 | 0.03 | 500.00 |\n| stromal cell | 0.80 | 5.26 | 0.59 | 0.71 | 0.33 | 0.04 | 335.00 |\n| conventional dendritic cell | 0.73 | 4.25 | 0.52 | 0.73 | 0.32 | 0.04 | 322.00 |\n| dendritic cell | 0.69 | 4.74 | 0.48 | 0.73 | 0.37 | 0.04 | 312.00 |\n| fibroblast | 0.76 | 3.46 | 0.66 | 0.82 | 0.31 | 0.03 | 276.00 |\n| mesothelial cell | 0.77 | 4.37 | 0.52 | 0.70 | 0.34 | 0.04 | 230.00 |\n| brush cell of trachebronchial tree | 0.61 | 5.05 | 0.58 | 0.73 | 0.33 | 0.03 | 165.00 |\n| lung neuroendocrine cell | 0.73 | 4.32 | 0.58 | 0.70 | 0.31 | 0.03 | 159.00 |\n| hematopoietic stem cell | 0.42 | 7.59 | 0.45 | 0.55 | 0.40 | 0.04 | 60.00 |"
 }

model.pt

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 version https://git-lfs.github.com/spec/v1
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+oid sha256:6f30a21eb1b2ef205b385f62cc4fddc18883e4f5d6e1f9b42f5487dc38786786
 size 5827102