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adata.h5ad

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lightning_logs/version_0/events.out.tfevents.1733439018.Yoseflab-R13B.337477.38

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lightning_logs/version_0/hparams.yaml

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+{}

lightning_logs/version_1/events.out.tfevents.1733446062.Yoseflab-R13B.365372.39

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lightning_logs/version_1/hparams.yaml

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metrics.json

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 {
-    "cell_wise_cv": "| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.77  | 1.81           |\n| Pearson Correlation | 0.87  | 0.88  |\n| Spearman Correlation | 0.79 | 0.78  |\n| R\u00b2 (R-Squared) | 0.51  | 0.56      |",
-    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 16.25   |\n| Pearson Correlation | 0.72  |\n| Spearman Correlation | 0.76 |\n| R\u00b2 (R-Squared) | 0.02  |",
-    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 0.96 | 1.07 | 0.76 | 0.96 | 0.34 | 0.90 | 5557.00 |\n| macrophage | 0.94 | 1.04 | 0.73 | 0.96 | 0.30 | 0.88 | 5338.00 |\n| bladder urothelial cell | 0.92 | 0.84 | 0.83 | 0.97 | 0.41 | 0.91 | 4151.00 |\n| T cell | 0.93 | 1.93 | 0.72 | 0.89 | 0.24 | 0.87 | 2916.00 |\n| myofibroblast cell | 0.92 | 1.85 | 0.67 | 0.88 | 0.34 | 0.84 | 2078.00 |\n| plasma cell | 0.90 | 1.83 | 0.73 | 0.89 | 0.14 | 0.86 | 1141.00 |\n| mast cell | 0.93 | 2.69 | 0.63 | 0.82 | 0.20 | 0.79 | 1029.00 |\n| pericyte | 0.93 | 2.26 | 0.70 | 0.87 | 0.28 | 0.78 | 875.00 |\n| mature NK T cell | 0.85 | 2.98 | 0.67 | 0.83 | 0.42 | 0.87 | 508.00 |\n| smooth muscle cell | 0.91 | 2.93 | 0.71 | 0.80 | 0.29 | 0.83 | 290.00 |\n| vein endothelial cell | 0.81 | 3.24 | 0.67 | 0.84 | 0.37 | 0.79 | 278.00 |\n| B cell | 0.87 | 4.08 | 0.56 | 0.68 | 0.36 | 0.76 | 253.00 |\n| capillary endothelial cell | 0.74 | 3.35 | 0.70 | 0.75 | 0.40 | 0.76 | 77.00 |\n| endothelial cell of lymphatic vessel | 0.78 | 4.80 | 0.63 | 0.71 | 0.29 | 0.70 | 74.00 |\n| plasmacytoid dendritic cell | 0.59 | 5.90 | 0.53 | 0.48 | 0.31 | 0.73 | 18.00 |"
+    "cell_wise_cv": "| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.77  | 1.79           |\n| Pearson Correlation | 0.87  | 0.88  |\n| Spearman Correlation | 0.79 | 0.78  |\n| R\u00b2 (R-Squared) | 0.53  | 0.52      |",
+    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 16.10   |\n| Pearson Correlation | 0.73  |\n| Spearman Correlation | 0.76 |\n| R\u00b2 (R-Squared) | 0.09  |",
+    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 0.96 | 1.01 | 0.78 | 0.96 | 0.34 | 0.90 | 5557.00 |\n| macrophage | 0.93 | 1.02 | 0.73 | 0.95 | 0.30 | 0.88 | 5338.00 |\n| bladder urothelial cell | 0.92 | 0.91 | 0.80 | 0.96 | 0.41 | 0.91 | 4151.00 |\n| T cell | 0.92 | 1.93 | 0.73 | 0.89 | 0.24 | 0.87 | 2916.00 |\n| myofibroblast cell | 0.92 | 1.84 | 0.67 | 0.87 | 0.34 | 0.84 | 2078.00 |\n| plasma cell | 0.88 | 1.76 | 0.75 | 0.89 | 0.14 | 0.86 | 1141.00 |\n| mast cell | 0.93 | 2.67 | 0.63 | 0.82 | 0.20 | 0.79 | 1029.00 |\n| pericyte | 0.93 | 2.16 | 0.72 | 0.87 | 0.28 | 0.78 | 875.00 |\n| mature NK T cell | 0.83 | 3.20 | 0.64 | 0.81 | 0.43 | 0.87 | 508.00 |\n| smooth muscle cell | 0.92 | 3.06 | 0.70 | 0.80 | 0.28 | 0.83 | 290.00 |\n| vein endothelial cell | 0.79 | 3.10 | 0.69 | 0.85 | 0.37 | 0.79 | 278.00 |\n| B cell | 0.86 | 3.88 | 0.58 | 0.70 | 0.35 | 0.76 | 253.00 |\n| capillary endothelial cell | 0.72 | 3.36 | 0.70 | 0.73 | 0.39 | 0.76 | 77.00 |\n| endothelial cell of lymphatic vessel | 0.80 | 4.50 | 0.65 | 0.73 | 0.28 | 0.70 | 74.00 |\n| plasmacytoid dendritic cell | 0.65 | 6.19 | 0.50 | 0.44 | 0.33 | 0.74 | 18.00 |"
 }

model.pt

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