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adata.h5ad

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lightning_logs/version_0/events.out.tfevents.1733435405.Yoseflab-R13B.337477.9

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lightning_logs/version_0/events.out.tfevents.1733438915.Yoseflab-R13B.337477.37

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lightning_logs/version_0/events.out.tfevents.1733440288.Yoseflab-R13B.337477.53

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lightning_logs/version_0/hparams.yaml

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+{}

metrics.json

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 {
-    "cell_wise_cv": "| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.96  | 2.16           |\n| Pearson Correlation | 0.82  | 0.79  |\n| Spearman Correlation | 0.81 | 0.79  |\n| R\u00b2 (R-Squared) | 0.60  | 0.50      |",
-    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 13.32   |\n| Pearson Correlation | 0.61  |\n| Spearman Correlation | 0.63 |\n| R\u00b2 (R-Squared) | -0.45  |",
-    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| conjunctival epithelial cell | 0.97 | 0.85 | 0.79 | 0.96 | 0.25 | 0.91 | 4587.00 |\n| corneal epithelial cell | 0.95 | 1.19 | 0.80 | 0.96 | 0.39 | 0.91 | 1488.00 |\n| eye photoreceptor cell | 0.93 | 2.16 | 0.73 | 0.89 | 0.33 | 0.86 | 891.00 |\n| keratocyte | 0.92 | 1.89 | 0.71 | 0.88 | 0.41 | 0.83 | 595.00 |\n| retinal blood vessel endothelial cell | 0.89 | 2.80 | 0.61 | 0.87 | 0.42 | 0.84 | 466.00 |\n| Mueller cell | 0.86 | 2.80 | 0.67 | 0.84 | 0.41 | 0.82 | 360.00 |\n| stromal cell | 0.86 | 1.01 | 0.76 | 0.92 | 0.38 | 0.75 | 325.00 |\n| T cell | 0.83 | 4.76 | 0.53 | 0.68 | 0.20 | 0.73 | 237.00 |\n| microglial cell | 0.88 | 3.28 | 0.62 | 0.78 | 0.31 | 0.73 | 209.00 |\n| radial glial cell | 0.85 | 2.11 | 0.71 | 0.86 | 0.47 | 0.81 | 195.00 |\n| dendritic cell | 0.87 | 4.37 | 0.60 | 0.69 | 0.23 | 0.70 | 182.00 |\n| melanocyte | 0.81 | 3.48 | 0.63 | 0.75 | 0.36 | 0.72 | 144.00 |\n| stem cell | 0.79 | 2.90 | 0.64 | 0.73 | 0.36 | 0.62 | 144.00 |\n| macrophage | 0.84 | 3.38 | 0.65 | 0.76 | 0.36 | 0.73 | 108.00 |\n| endothelial cell | 0.83 | 3.90 | 0.63 | 0.74 | 0.36 | 0.70 | 105.00 |\n| B cell | 0.82 | 5.52 | 0.55 | 0.62 | 0.26 | 0.72 | 102.00 |\n| fibroblast | 0.77 | 3.60 | 0.65 | 0.73 | 0.36 | 0.66 | 95.00 |\n| surface ectodermal cell | 0.69 | 4.63 | 0.61 | 0.61 | 0.39 | 0.69 | 54.00 |\n| epithelial cell of lacrimal sac | 0.72 | 5.08 | 0.54 | 0.48 | 0.39 | 0.67 | 52.00 |\n| retinal pigment epithelial cell | 0.86 | 5.47 | 0.58 | 0.62 | 0.34 | 0.75 | 49.00 |\n| plasma cell | 0.61 | 5.18 | 0.56 | 0.52 | 0.30 | 0.79 | 46.00 |\n| monocyte | 0.72 | 5.11 | 0.58 | 0.59 | 0.33 | 0.68 | 44.00 |\n| fat cell | 0.79 | 3.79 | 0.65 | 0.75 | 0.35 | 0.69 | 44.00 |\n| retinal bipolar neuron | 0.74 | 4.76 | 0.60 | 0.65 | 0.39 | 0.70 | 34.00 |\n| erythroid lineage cell | 0.29 | 6.96 | 0.25 | 0.26 | 0.25 | 0.93 | 30.00 |\n| CD4-positive, alpha-beta T cell | 0.40 | 6.50 | 0.45 | 0.35 | 0.31 | 0.54 | 23.00 |\n| pigmented ciliary epithelial cell | 0.63 | 5.26 | 0.58 | 0.53 | 0.33 | 0.63 | 17.00 |"
+    "cell_wise_cv": "| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.97  | 2.19           |\n| Pearson Correlation | 0.82  | 0.78  |\n| Spearman Correlation | 0.81 | 0.79  |\n| R\u00b2 (R-Squared) | 0.59  | 0.46      |",
+    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 13.33   |\n| Pearson Correlation | 0.59  |\n| Spearman Correlation | 0.60 |\n| R\u00b2 (R-Squared) | -0.39  |",
+    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| conjunctival epithelial cell | 0.98 | 0.88 | 0.77 | 0.96 | 0.25 | 0.91 | 4587.00 |\n| corneal epithelial cell | 0.93 | 1.32 | 0.76 | 0.95 | 0.39 | 0.91 | 1488.00 |\n| eye photoreceptor cell | 0.94 | 2.09 | 0.74 | 0.90 | 0.32 | 0.86 | 891.00 |\n| keratocyte | 0.93 | 1.83 | 0.72 | 0.88 | 0.41 | 0.83 | 595.00 |\n| retinal blood vessel endothelial cell | 0.90 | 2.79 | 0.60 | 0.88 | 0.41 | 0.84 | 466.00 |\n| Mueller cell | 0.86 | 2.77 | 0.68 | 0.85 | 0.40 | 0.82 | 360.00 |\n| stromal cell | 0.84 | 1.05 | 0.74 | 0.92 | 0.38 | 0.75 | 325.00 |\n| T cell | 0.78 | 4.66 | 0.54 | 0.68 | 0.21 | 0.73 | 237.00 |\n| microglial cell | 0.87 | 3.46 | 0.59 | 0.77 | 0.31 | 0.73 | 209.00 |\n| radial glial cell | 0.86 | 2.11 | 0.71 | 0.85 | 0.47 | 0.81 | 195.00 |\n| dendritic cell | 0.87 | 4.56 | 0.58 | 0.67 | 0.24 | 0.70 | 182.00 |\n| melanocyte | 0.82 | 3.28 | 0.65 | 0.76 | 0.35 | 0.72 | 144.00 |\n| stem cell | 0.82 | 2.80 | 0.66 | 0.73 | 0.37 | 0.63 | 144.00 |\n| macrophage | 0.82 | 3.45 | 0.65 | 0.76 | 0.36 | 0.73 | 108.00 |\n| endothelial cell | 0.81 | 3.65 | 0.66 | 0.76 | 0.36 | 0.71 | 105.00 |\n| B cell | 0.84 | 5.53 | 0.55 | 0.62 | 0.26 | 0.72 | 102.00 |\n| fibroblast | 0.76 | 3.36 | 0.68 | 0.74 | 0.35 | 0.65 | 95.00 |\n| surface ectodermal cell | 0.66 | 4.59 | 0.61 | 0.62 | 0.38 | 0.69 | 54.00 |\n| epithelial cell of lacrimal sac | 0.68 | 5.19 | 0.53 | 0.48 | 0.40 | 0.67 | 52.00 |\n| retinal pigment epithelial cell | 0.86 | 5.64 | 0.57 | 0.62 | 0.34 | 0.75 | 49.00 |\n| plasma cell | 0.59 | 5.37 | 0.54 | 0.50 | 0.29 | 0.79 | 46.00 |\n| monocyte | 0.69 | 5.03 | 0.58 | 0.59 | 0.33 | 0.68 | 44.00 |\n| fat cell | 0.82 | 3.73 | 0.66 | 0.76 | 0.34 | 0.68 | 44.00 |\n| retinal bipolar neuron | 0.68 | 4.76 | 0.60 | 0.64 | 0.39 | 0.70 | 34.00 |\n| erythroid lineage cell | 0.33 | 7.35 | 0.23 | 0.24 | 0.23 | 0.93 | 30.00 |\n| CD4-positive, alpha-beta T cell | 0.40 | 6.72 | 0.44 | 0.35 | 0.31 | 0.54 | 23.00 |\n| pigmented ciliary epithelial cell | 0.59 | 5.24 | 0.58 | 0.53 | 0.34 | 0.63 | 17.00 |"
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model.pt

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