Hugging Face's logo

scvi-tools
/
tabula-sapiens-lymph_node-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
Model card Files Metrics Community
canergen commited on
Commit
6956aac
•
1 Parent(s): 98163ae

Upload folder using huggingface_hub

Browse files
Files changed (3) hide show
  1. adata.h5ad +1 -1
  2. metrics.json +3 -3
  3. model.pt +1 -1
adata.h5ad CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:87f49b96d93574993d6b35ee897fc20f084bb3f66ba94058d0fedaa28c6ef8e6
3
  size 40850936
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1ef3f200052b9ebd81e12b288489bfa5e5979577e404a275c528f5a4f0b7e35c
3
  size 40850936
metrics.json CHANGED
@@ -1,5 +1,5 @@
1
  {
2
- "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.53 | 1.56 |\n| Pearson Correlation | 0.83 | 0.81 |\n| Spearman Correlation | 0.75 | 0.74 |\n| R\u00b2 (R-Squared) | 0.36 | 0.28 |",
3
- "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 24.43 |\n| Pearson Correlation | 0.68 |\n| Spearman Correlation | 0.75 |\n| R\u00b2 (R-Squared) | -0.67 |",
4
- "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 0.96 | 0.60 | 0.75 | 0.97 | 0.30 | 0.87 | 15249.00 |\n| effector CD4-positive, alpha-beta T cell | 0.90 | 1.07 | 0.57 | 0.90 | 0.27 | 0.77 | 6908.00 |\n| effector CD8-positive, alpha-beta T cell | 0.96 | 1.36 | 0.53 | 0.88 | 0.27 | 0.78 | 5860.00 |\n| T cell | 0.89 | 1.60 | 0.54 | 0.83 | 0.24 | 0.71 | 3848.00 |\n| type I NK T cell | 0.92 | 1.60 | 0.55 | 0.83 | 0.30 | 0.71 | 3758.00 |\n| plasma cell | 0.87 | 0.79 | 0.77 | 0.95 | 0.35 | 0.91 | 2426.00 |\n| innate lymphoid cell | 0.77 | 1.59 | 0.52 | 0.78 | 0.25 | 0.58 | 2052.00 |\n| macrophage | 0.75 | 1.63 | 0.74 | 0.93 | 0.44 | 0.88 | 1086.00 |\n| regulatory T cell | 0.85 | 2.73 | 0.58 | 0.74 | 0.41 | 0.72 | 881.00 |\n| mature NK T cell | 0.84 | 3.71 | 0.58 | 0.67 | 0.38 | 0.64 | 437.00 |\n| classical monocyte | 0.82 | 3.97 | 0.64 | 0.72 | 0.45 | 0.76 | 161.00 |\n| endothelial cell | 0.73 | 2.95 | 0.71 | 0.84 | 0.57 | 0.85 | 143.00 |\n| intermediate monocyte | 0.75 | 4.02 | 0.63 | 0.73 | 0.52 | 0.79 | 134.00 |\n| mast cell | 0.82 | 4.64 | 0.63 | 0.65 | 0.38 | 0.74 | 119.00 |\n| stromal cell | 0.68 | 3.55 | 0.71 | 0.81 | 0.53 | 0.85 | 111.00 |\n| neutrophil | 0.87 | 5.10 | 0.58 | 0.55 | 0.40 | 0.83 | 107.00 |\n| CD1c-positive myeloid dendritic cell | 0.70 | 3.98 | 0.66 | 0.74 | 0.51 | 0.79 | 68.00 |\n| CD141-positive myeloid dendritic cell | 0.65 | 4.65 | 0.61 | 0.61 | 0.48 | 0.75 | 48.00 |\n| hematopoietic stem cell | 0.46 | 5.14 | 0.57 | 0.52 | 0.47 | 0.67 | 34.00 |\n| non-classical monocyte | 0.75 | 5.04 | 0.60 | 0.57 | 0.40 | 0.69 | 31.00 |\n| erythrocyte | 0.65 | 5.74 | 0.48 | 0.40 | 0.39 | 0.80 | 24.00 |\n| mature conventional dendritic cell | 0.59 | 6.48 | 0.49 | 0.42 | 0.38 | 0.62 | 17.00 |"
5
  }
 
1
  {
2
+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.52 | 1.56 |\n| Pearson Correlation | 0.83 | 0.82 |\n| Spearman Correlation | 0.75 | 0.75 |\n| R\u00b2 (R-Squared) | 0.35 | 0.28 |",
3
+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 24.66 |\n| Pearson Correlation | 0.68 |\n| Spearman Correlation | 0.74 |\n| R\u00b2 (R-Squared) | -0.67 |",
4
+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 0.96 | 0.56 | 0.80 | 0.96 | 0.30 | 0.87 | 15249.00 |\n| effector CD4-positive, alpha-beta T cell | 0.90 | 1.10 | 0.55 | 0.90 | 0.27 | 0.77 | 6908.00 |\n| effector CD8-positive, alpha-beta T cell | 0.95 | 1.33 | 0.54 | 0.89 | 0.27 | 0.78 | 5860.00 |\n| T cell | 0.86 | 1.67 | 0.50 | 0.83 | 0.25 | 0.71 | 3848.00 |\n| type I NK T cell | 0.88 | 1.44 | 0.61 | 0.85 | 0.30 | 0.71 | 3758.00 |\n| plasma cell | 0.88 | 0.82 | 0.77 | 0.94 | 0.35 | 0.91 | 2426.00 |\n| innate lymphoid cell | 0.76 | 1.59 | 0.53 | 0.77 | 0.25 | 0.58 | 2052.00 |\n| macrophage | 0.77 | 1.66 | 0.72 | 0.92 | 0.45 | 0.88 | 1086.00 |\n| regulatory T cell | 0.84 | 2.83 | 0.57 | 0.74 | 0.40 | 0.71 | 881.00 |\n| mature NK T cell | 0.83 | 3.92 | 0.55 | 0.64 | 0.40 | 0.65 | 437.00 |\n| classical monocyte | 0.80 | 4.30 | 0.60 | 0.71 | 0.47 | 0.76 | 161.00 |\n| endothelial cell | 0.69 | 2.94 | 0.71 | 0.85 | 0.57 | 0.85 | 143.00 |\n| intermediate monocyte | 0.73 | 3.94 | 0.64 | 0.74 | 0.51 | 0.79 | 134.00 |\n| mast cell | 0.82 | 4.77 | 0.62 | 0.64 | 0.38 | 0.74 | 119.00 |\n| stromal cell | 0.69 | 3.65 | 0.70 | 0.81 | 0.53 | 0.85 | 111.00 |\n| neutrophil | 0.87 | 4.86 | 0.61 | 0.58 | 0.39 | 0.83 | 107.00 |\n| CD1c-positive myeloid dendritic cell | 0.71 | 4.13 | 0.65 | 0.72 | 0.52 | 0.79 | 68.00 |\n| CD141-positive myeloid dendritic cell | 0.67 | 4.59 | 0.62 | 0.62 | 0.49 | 0.75 | 48.00 |\n| hematopoietic stem cell | 0.53 | 5.15 | 0.56 | 0.51 | 0.46 | 0.66 | 34.00 |\n| non-classical monocyte | 0.75 | 5.22 | 0.58 | 0.56 | 0.40 | 0.69 | 31.00 |\n| erythrocyte | 0.65 | 5.66 | 0.48 | 0.42 | 0.42 | 0.80 | 24.00 |\n| mature conventional dendritic cell | 0.57 | 6.28 | 0.50 | 0.44 | 0.38 | 0.62 | 17.00 |"
5
  }
model.pt CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:b908ce341a00949f5231f4c6c719bab404e26bbf3ae2db0afa9a92c74307c85d
3
  size 8560061
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9d7831871306d66cbd84000ef01cd91b3279ba69488ebe44523f1724787dcef2
3
  size 8560061