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tabula-sapiens-mammary-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  27. metrics.json +3 -3
  28. model.pt +1 -1
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- "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 2.40 | 2.45 |\n| Pearson Correlation | 0.72 | 0.74 |\n| Spearman Correlation | 0.69 | 0.71 |\n| R\u00b2 (R-Squared) | 0.25 | 0.33 |",
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- "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 15.84 |\n| Pearson Correlation | 0.62 |\n| Spearman Correlation | 0.65 |\n| R\u00b2 (R-Squared) | -1.46 |",
4
- "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 0.93 | 0.66 | 0.73 | 0.97 | 0.47 | 0.91 | 5378.00 |\n| T cell | 0.92 | 2.04 | 0.59 | 0.82 | 0.19 | 0.83 | 2324.00 |\n| fibroblast of breast | 0.91 | 1.18 | 0.72 | 0.94 | 0.44 | 0.89 | 2066.00 |\n| basal cell | 0.90 | 2.99 | 0.62 | 0.77 | 0.33 | 0.72 | 476.00 |\n| vein endothelial cell | 0.89 | 3.19 | 0.67 | 0.81 | 0.38 | 0.79 | 263.00 |\n| macrophage | 0.80 | 3.49 | 0.62 | 0.75 | 0.35 | 0.79 | 219.00 |\n| plasma cell | 0.78 | 3.40 | 0.61 | 0.71 | 0.21 | 0.86 | 194.00 |\n| endothelial cell of artery | 0.86 | 3.92 | 0.63 | 0.75 | 0.40 | 0.75 | 168.00 |\n| pericyte | 0.85 | 4.57 | 0.60 | 0.63 | 0.37 | 0.71 | 106.00 |\n| vascular associated smooth muscle cell | 0.78 | 4.96 | 0.59 | 0.59 | 0.38 | 0.71 | 71.00 |\n| B cell | 0.57 | 7.45 | 0.42 | 0.38 | 0.36 | 0.73 | 43.00 |\n| endothelial cell of lymphatic vessel | 0.56 | 6.34 | 0.51 | 0.45 | 0.41 | 0.70 | 32.00 |\n| mature NK T cell | 0.52 | 5.78 | 0.46 | 0.44 | 0.32 | 0.78 | 19.00 |\n| mast cell | 0.30 | 6.66 | 0.40 | 0.34 | 0.41 | 0.76 | 16.00 |"
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 2.40 | 2.40 |\n| Pearson Correlation | 0.73 | 0.74 |\n| Spearman Correlation | 0.69 | 0.71 |\n| R\u00b2 (R-Squared) | 0.26 | 0.33 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 16.01 |\n| Pearson Correlation | 0.62 |\n| Spearman Correlation | 0.65 |\n| R\u00b2 (R-Squared) | -1.69 |",
4
+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| luminal epithelial cell of mammary gland | 0.91 | 0.61 | 0.82 | 0.97 | 0.47 | 0.91 | 5378.00 |\n| T cell | 0.93 | 1.99 | 0.60 | 0.84 | 0.18 | 0.83 | 2324.00 |\n| fibroblast of breast | 0.90 | 1.17 | 0.73 | 0.94 | 0.44 | 0.89 | 2066.00 |\n| basal cell | 0.92 | 2.63 | 0.67 | 0.80 | 0.31 | 0.72 | 476.00 |\n| vein endothelial cell | 0.85 | 3.26 | 0.65 | 0.80 | 0.39 | 0.79 | 263.00 |\n| macrophage | 0.75 | 3.23 | 0.66 | 0.78 | 0.33 | 0.79 | 219.00 |\n| plasma cell | 0.78 | 3.14 | 0.64 | 0.73 | 0.19 | 0.86 | 194.00 |\n| endothelial cell of artery | 0.82 | 4.08 | 0.61 | 0.74 | 0.40 | 0.75 | 168.00 |\n| pericyte | 0.85 | 4.56 | 0.60 | 0.62 | 0.38 | 0.71 | 106.00 |\n| vascular associated smooth muscle cell | 0.73 | 5.18 | 0.57 | 0.56 | 0.40 | 0.72 | 71.00 |\n| B cell | 0.61 | 7.43 | 0.41 | 0.37 | 0.38 | 0.74 | 43.00 |\n| endothelial cell of lymphatic vessel | 0.63 | 6.07 | 0.53 | 0.48 | 0.39 | 0.70 | 32.00 |\n| mature NK T cell | 0.53 | 6.14 | 0.43 | 0.41 | 0.34 | 0.78 | 19.00 |\n| mast cell | 0.27 | 6.78 | 0.39 | 0.33 | 0.40 | 0.75 | 16.00 |"
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