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tabula-sapiens-prostate-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  2. lightning_logs/version_0/events.out.tfevents.1733432962.Yoseflab-R13B.329818.17 +3 -0
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  14. lightning_logs/version_0/hparams.yaml +1 -0
  15. lightning_logs/version_1/events.out.tfevents.1733434445.Yoseflab-R13B.337477.0 +3 -0
  16. lightning_logs/version_1/hparams.yaml +1 -0
  17. lightning_logs/version_2/events.out.tfevents.1733434470.Yoseflab-R13B.337477.1 +3 -0
  18. lightning_logs/version_2/hparams.yaml +1 -0
  19. metrics.json +5 -0
  20. model.pt +2 -2
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.93 | 2.08 |\n| Pearson Correlation | 0.89 | 0.87 |\n| Spearman Correlation | 0.88 | 0.86 |\n| R\u00b2 (R-Squared) | 0.76 | 0.72 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 17.68 |\n| Pearson Correlation | 0.67 |\n| Spearman Correlation | 0.69 |\n| R\u00b2 (R-Squared) | -1.57 |",
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+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| epithelial cell | 0.97 | 0.89 | 0.63 | 0.91 | 0.14 | 0.85 | 6637.00 |\n| basal cell of prostate epithelium | 0.93 | 0.75 | 0.67 | 0.94 | 0.48 | 0.89 | 3198.00 |\n| CD8-positive, alpha-beta T cell | 0.92 | 2.77 | 0.66 | 0.84 | 0.30 | 0.82 | 1081.00 |\n| endothelial cell | 0.81 | 2.90 | 0.66 | 0.83 | 0.49 | 0.85 | 471.00 |\n| mature NK T cell | 0.87 | 4.35 | 0.56 | 0.73 | 0.34 | 0.78 | 430.00 |\n| macrophage | 0.84 | 3.08 | 0.67 | 0.83 | 0.44 | 0.84 | 317.00 |\n| club cell | 0.77 | 2.25 | 0.62 | 0.79 | 0.51 | 0.80 | 290.00 |\n| smooth muscle cell | 0.84 | 3.04 | 0.66 | 0.82 | 0.49 | 0.83 | 285.00 |\n| fibroblast | 0.83 | 3.49 | 0.67 | 0.78 | 0.46 | 0.80 | 207.00 |\n| luminal cell of prostate epithelium | 0.66 | 3.96 | 0.63 | 0.71 | 0.48 | 0.76 | 60.00 |\n| erythroid progenitor cell | 0.42 | 5.41 | 0.39 | 0.36 | 0.42 | 0.95 | 52.00 |\n| monocyte | 0.61 | 4.59 | 0.73 | 0.81 | 0.21 | 0.64 | 33.00 |\n| stromal cell | 0.38 | 8.08 | 0.42 | 0.49 | 0.25 | 0.47 | 32.00 |"
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