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scvi-tools
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tabula-sapiens-salivary_gland-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -54,7 +54,7 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 1.26 | 1.32 |
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  | Pearson Correlation | 0.94 | 0.93 |
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  | Spearman Correlation | 0.93 | 0.92 |
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  | R² (R-Squared) | 0.88 | 0.85 |
@@ -66,10 +66,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 19.15 |
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- | Pearson Correlation | 0.71 |
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- | Spearman Correlation | 0.79 |
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- | R² (R-Squared) | -0.82 |
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  </details>
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@@ -86,29 +86,29 @@ cell-type.
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | acinar cell of salivary gland | 0.95 | 0.56 | 0.75 | 0.96 | 0.14 | 0.94 | 10147.00 |
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- | memory B cell | 0.92 | 1.23 | 0.66 | 0.93 | 0.38 | 0.88 | 2879.00 |
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- | fibroblast | 0.99 | 1.04 | 0.69 | 0.93 | 0.44 | 0.88 | 2169.00 |
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- | CD8-positive, alpha-beta T cell | 0.95 | 2.14 | 0.67 | 0.88 | 0.22 | 0.77 | 1979.00 |
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- | macrophage | 0.84 | 1.31 | 0.66 | 0.92 | 0.48 | 0.88 | 1761.00 |
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- | duct epithelial cell | 0.93 | 1.25 | 0.67 | 0.90 | 0.39 | 0.83 | 1693.00 |
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- | CD4-positive helper T cell | 0.98 | 2.04 | 0.64 | 0.87 | 0.32 | 0.83 | 1221.00 |
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- | naive B cell | 0.94 | 2.38 | 0.65 | 0.85 | 0.33 | 0.84 | 1120.00 |
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- | basal cell | 0.86 | 1.30 | 0.76 | 0.92 | 0.55 | 0.90 | 922.00 |
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- | adventitial cell | 0.91 | 2.22 | 0.68 | 0.87 | 0.37 | 0.80 | 442.00 |
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- | monocyte | 0.89 | 2.78 | 0.65 | 0.81 | 0.41 | 0.81 | 426.00 |
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- | plasma cell | 0.86 | 2.14 | 0.72 | 0.82 | 0.21 | 0.85 | 345.00 |
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- | endothelial cell | 0.82 | 2.36 | 0.69 | 0.81 | 0.48 | 0.83 | 323.00 |
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- | endothelial cell of lymphatic vessel | 0.79 | 2.33 | 0.71 | 0.85 | 0.51 | 0.83 | 320.00 |
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- | mature NK T cell | 0.83 | 3.19 | 0.65 | 0.78 | 0.39 | 0.80 | 317.00 |
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- | T cell | 0.74 | 3.86 | 0.53 | 0.58 | 0.30 | 0.59 | 227.00 |
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- | myoepithelial cell | 0.88 | 3.48 | 0.63 | 0.69 | 0.34 | 0.68 | 196.00 |
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- | CD4-positive, alpha-beta T cell | 0.44 | 6.24 | 0.46 | 0.60 | 0.21 | 0.72 | 182.00 |
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- | pericyte | 0.76 | 3.19 | 0.67 | 0.73 | 0.42 | 0.74 | 146.00 |
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- | B cell | 0.33 | 2.80 | 0.58 | 0.76 | 0.44 | 0.75 | 137.00 |
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- | neutrophil | 0.87 | 4.26 | 0.62 | 0.60 | 0.33 | 0.77 | 115.00 |
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- | ionocyte | 0.76 | 4.25 | 0.64 | 0.66 | 0.40 | 0.73 | 87.00 |
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- | salivary gland cell | 0.54 | 3.56 | 0.66 | 0.72 | 0.55 | 0.81 | 45.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 1.27 | 1.33 |
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  | Pearson Correlation | 0.94 | 0.93 |
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  | Spearman Correlation | 0.93 | 0.92 |
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  | R² (R-Squared) | 0.88 | 0.85 |
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 18.74 |
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+ | Pearson Correlation | 0.73 |
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+ | Spearman Correlation | 0.80 |
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+ | R² (R-Squared) | -0.74 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | acinar cell of salivary gland | 0.96 | 0.61 | 0.72 | 0.96 | 0.14 | 0.94 | 10147.00 |
90
+ | memory B cell | 0.91 | 1.26 | 0.66 | 0.92 | 0.39 | 0.89 | 2879.00 |
91
+ | fibroblast | 0.98 | 0.97 | 0.73 | 0.93 | 0.44 | 0.88 | 2169.00 |
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+ | CD8-positive, alpha-beta T cell | 0.97 | 2.17 | 0.66 | 0.89 | 0.21 | 0.77 | 1979.00 |
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+ | macrophage | 0.84 | 1.16 | 0.71 | 0.92 | 0.48 | 0.88 | 1761.00 |
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+ | duct epithelial cell | 0.94 | 1.29 | 0.66 | 0.90 | 0.40 | 0.83 | 1693.00 |
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+ | CD4-positive helper T cell | 0.98 | 2.14 | 0.62 | 0.86 | 0.33 | 0.83 | 1221.00 |
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+ | naive B cell | 0.94 | 2.34 | 0.66 | 0.83 | 0.34 | 0.84 | 1120.00 |
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+ | basal cell | 0.86 | 1.37 | 0.72 | 0.92 | 0.56 | 0.90 | 922.00 |
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+ | adventitial cell | 0.89 | 2.26 | 0.67 | 0.88 | 0.37 | 0.80 | 442.00 |
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+ | monocyte | 0.85 | 2.59 | 0.67 | 0.82 | 0.39 | 0.80 | 426.00 |
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+ | plasma cell | 0.86 | 2.27 | 0.69 | 0.81 | 0.22 | 0.85 | 345.00 |
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+ | endothelial cell | 0.80 | 2.42 | 0.69 | 0.82 | 0.48 | 0.83 | 323.00 |
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+ | endothelial cell of lymphatic vessel | 0.83 | 2.48 | 0.68 | 0.84 | 0.52 | 0.84 | 320.00 |
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+ | mature NK T cell | 0.84 | 3.32 | 0.63 | 0.77 | 0.39 | 0.80 | 317.00 |
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+ | T cell | 0.69 | 4.08 | 0.50 | 0.54 | 0.32 | 0.60 | 227.00 |
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+ | myoepithelial cell | 0.86 | 3.36 | 0.65 | 0.71 | 0.32 | 0.67 | 196.00 |
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+ | CD4-positive, alpha-beta T cell | 0.42 | 5.99 | 0.49 | 0.60 | 0.20 | 0.71 | 182.00 |
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+ | pericyte | 0.76 | 3.20 | 0.67 | 0.73 | 0.42 | 0.74 | 146.00 |
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+ | B cell | 0.33 | 2.74 | 0.60 | 0.77 | 0.43 | 0.75 | 137.00 |
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+ | neutrophil | 0.86 | 4.40 | 0.61 | 0.60 | 0.34 | 0.77 | 115.00 |
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+ | ionocyte | 0.84 | 4.57 | 0.60 | 0.63 | 0.41 | 0.73 | 87.00 |
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+ | salivary gland cell | 0.54 | 3.68 | 0.65 | 0.72 | 0.56 | 0.82 | 45.00 |
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  </details>
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