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scvi-tools
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tabula-sapiens-salivary_gland-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  1. adata.h5ad +2 -2
  2. lightning_logs/version_0/events.out.tfevents.1733433016.Yoseflab-R13B.329818.18 +3 -0
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  16. lightning_logs/version_0/events.out.tfevents.1733448725.Yoseflab-R13B.365372.63 +3 -0
  17. lightning_logs/version_0/hparams.yaml +1 -0
  18. lightning_logs/version_1/events.out.tfevents.1733434519.Yoseflab-R13B.337477.2 +3 -0
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  30. lightning_logs/version_1/events.out.tfevents.1733447267.Yoseflab-R13B.365372.51 +3 -0
  31. lightning_logs/version_1/hparams.yaml +1 -0
  32. lightning_logs/version_2/events.out.tfevents.1733442287.Yoseflab-R13B.365372.12 +3 -0
  33. lightning_logs/version_2/hparams.yaml +1 -0
  34. metrics.json +5 -0
  35. model.pt +2 -2
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.26 | 1.32 |\n| Pearson Correlation | 0.94 | 0.93 |\n| Spearman Correlation | 0.93 | 0.92 |\n| R\u00b2 (R-Squared) | 0.88 | 0.85 |",
3
+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 19.15 |\n| Pearson Correlation | 0.71 |\n| Spearman Correlation | 0.79 |\n| R\u00b2 (R-Squared) | -0.82 |",
4
+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| acinar cell of salivary gland | 0.95 | 0.56 | 0.75 | 0.96 | 0.14 | 0.94 | 10147.00 |\n| memory B cell | 0.92 | 1.23 | 0.66 | 0.93 | 0.38 | 0.88 | 2879.00 |\n| fibroblast | 0.99 | 1.04 | 0.69 | 0.93 | 0.44 | 0.88 | 2169.00 |\n| CD8-positive, alpha-beta T cell | 0.95 | 2.14 | 0.67 | 0.88 | 0.22 | 0.77 | 1979.00 |\n| macrophage | 0.84 | 1.31 | 0.66 | 0.92 | 0.48 | 0.88 | 1761.00 |\n| duct epithelial cell | 0.93 | 1.25 | 0.67 | 0.90 | 0.39 | 0.83 | 1693.00 |\n| CD4-positive helper T cell | 0.98 | 2.04 | 0.64 | 0.87 | 0.32 | 0.83 | 1221.00 |\n| naive B cell | 0.94 | 2.38 | 0.65 | 0.85 | 0.33 | 0.84 | 1120.00 |\n| basal cell | 0.86 | 1.30 | 0.76 | 0.92 | 0.55 | 0.90 | 922.00 |\n| adventitial cell | 0.91 | 2.22 | 0.68 | 0.87 | 0.37 | 0.80 | 442.00 |\n| monocyte | 0.89 | 2.78 | 0.65 | 0.81 | 0.41 | 0.81 | 426.00 |\n| plasma cell | 0.86 | 2.14 | 0.72 | 0.82 | 0.21 | 0.85 | 345.00 |\n| endothelial cell | 0.82 | 2.36 | 0.69 | 0.81 | 0.48 | 0.83 | 323.00 |\n| endothelial cell of lymphatic vessel | 0.79 | 2.33 | 0.71 | 0.85 | 0.51 | 0.83 | 320.00 |\n| mature NK T cell | 0.83 | 3.19 | 0.65 | 0.78 | 0.39 | 0.80 | 317.00 |\n| T cell | 0.74 | 3.86 | 0.53 | 0.58 | 0.30 | 0.59 | 227.00 |\n| myoepithelial cell | 0.88 | 3.48 | 0.63 | 0.69 | 0.34 | 0.68 | 196.00 |\n| CD4-positive, alpha-beta T cell | 0.44 | 6.24 | 0.46 | 0.60 | 0.21 | 0.72 | 182.00 |\n| pericyte | 0.76 | 3.19 | 0.67 | 0.73 | 0.42 | 0.74 | 146.00 |\n| B cell | 0.33 | 2.80 | 0.58 | 0.76 | 0.44 | 0.75 | 137.00 |\n| neutrophil | 0.87 | 4.26 | 0.62 | 0.60 | 0.33 | 0.77 | 115.00 |\n| ionocyte | 0.76 | 4.25 | 0.64 | 0.66 | 0.40 | 0.73 | 87.00 |\n| salivary gland cell | 0.54 | 3.56 | 0.66 | 0.72 | 0.55 | 0.81 | 45.00 |"
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