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tabula-sapiens-salivary_gland-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
Model card Files Metrics Community
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  1. adata.h5ad +1 -1
  2. metrics.json +3 -3
  3. model.pt +1 -1
adata.h5ad CHANGED
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  size 27114448
metrics.json CHANGED
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  {
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- "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.26 | 1.35 |\n| Pearson Correlation | 0.95 | 0.93 |\n| Spearman Correlation | 0.93 | 0.92 |\n| R\u00b2 (R-Squared) | 0.89 | 0.86 |",
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- "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 19.36 |\n| Pearson Correlation | 0.70 |\n| Spearman Correlation | 0.77 |\n| R\u00b2 (R-Squared) | -1.07 |",
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- "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| acinar cell of salivary gland | 0.96 | 0.65 | 0.70 | 0.96 | 0.14 | 0.94 | 10147.00 |\n| memory B cell | 0.93 | 1.32 | 0.65 | 0.92 | 0.39 | 0.89 | 2879.00 |\n| fibroblast | 0.97 | 1.08 | 0.68 | 0.93 | 0.44 | 0.88 | 2169.00 |\n| CD8-positive, alpha-beta T cell | 0.96 | 2.28 | 0.64 | 0.87 | 0.21 | 0.77 | 1979.00 |\n| macrophage | 0.86 | 1.23 | 0.70 | 0.93 | 0.48 | 0.88 | 1761.00 |\n| duct epithelial cell | 0.91 | 1.25 | 0.66 | 0.89 | 0.39 | 0.83 | 1693.00 |\n| CD4-positive helper T cell | 0.97 | 2.10 | 0.63 | 0.87 | 0.32 | 0.83 | 1221.00 |\n| naive B cell | 0.92 | 2.46 | 0.64 | 0.83 | 0.34 | 0.84 | 1120.00 |\n| basal cell | 0.86 | 1.39 | 0.72 | 0.91 | 0.56 | 0.91 | 922.00 |\n| adventitial cell | 0.91 | 2.23 | 0.67 | 0.87 | 0.37 | 0.80 | 442.00 |\n| monocyte | 0.89 | 2.63 | 0.67 | 0.82 | 0.40 | 0.80 | 426.00 |\n| plasma cell | 0.86 | 2.35 | 0.67 | 0.79 | 0.22 | 0.85 | 345.00 |\n| endothelial cell | 0.83 | 2.37 | 0.69 | 0.82 | 0.48 | 0.83 | 323.00 |\n| endothelial cell of lymphatic vessel | 0.81 | 2.62 | 0.65 | 0.81 | 0.51 | 0.84 | 320.00 |\n| mature NK T cell | 0.82 | 3.15 | 0.65 | 0.78 | 0.39 | 0.80 | 317.00 |\n| T cell | 0.74 | 4.22 | 0.47 | 0.52 | 0.32 | 0.60 | 227.00 |\n| myoepithelial cell | 0.88 | 3.65 | 0.61 | 0.68 | 0.34 | 0.68 | 196.00 |\n| CD4-positive, alpha-beta T cell | 0.46 | 5.75 | 0.50 | 0.61 | 0.21 | 0.72 | 182.00 |\n| pericyte | 0.78 | 3.38 | 0.64 | 0.69 | 0.44 | 0.75 | 146.00 |\n| B cell | 0.35 | 2.65 | 0.60 | 0.77 | 0.43 | 0.75 | 137.00 |\n| neutrophil | 0.89 | 4.44 | 0.61 | 0.58 | 0.36 | 0.78 | 115.00 |\n| ionocyte | 0.82 | 4.39 | 0.63 | 0.64 | 0.39 | 0.72 | 87.00 |\n| salivary gland cell | 0.52 | 3.74 | 0.65 | 0.71 | 0.54 | 0.81 | 45.00 |"
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  }
 
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  {
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.25 | 1.34 |\n| Pearson Correlation | 0.95 | 0.94 |\n| Spearman Correlation | 0.93 | 0.92 |\n| R\u00b2 (R-Squared) | 0.89 | 0.86 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 19.41 |\n| Pearson Correlation | 0.69 |\n| Spearman Correlation | 0.77 |\n| R\u00b2 (R-Squared) | -0.95 |",
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+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| acinar cell of salivary gland | 0.96 | 0.60 | 0.74 | 0.96 | 0.14 | 0.94 | 10147.00 |\n| memory B cell | 0.93 | 1.22 | 0.69 | 0.92 | 0.38 | 0.88 | 2879.00 |\n| fibroblast | 0.97 | 1.06 | 0.69 | 0.92 | 0.44 | 0.88 | 2169.00 |\n| CD8-positive, alpha-beta T cell | 0.94 | 2.11 | 0.67 | 0.88 | 0.21 | 0.77 | 1979.00 |\n| macrophage | 0.87 | 1.23 | 0.69 | 0.93 | 0.48 | 0.88 | 1761.00 |\n| duct epithelial cell | 0.93 | 1.11 | 0.72 | 0.91 | 0.39 | 0.83 | 1693.00 |\n| CD4-positive helper T cell | 0.97 | 2.08 | 0.62 | 0.87 | 0.32 | 0.83 | 1221.00 |\n| naive B cell | 0.93 | 2.37 | 0.66 | 0.84 | 0.33 | 0.84 | 1120.00 |\n| basal cell | 0.87 | 1.44 | 0.71 | 0.92 | 0.55 | 0.90 | 922.00 |\n| adventitial cell | 0.91 | 2.36 | 0.65 | 0.87 | 0.37 | 0.80 | 442.00 |\n| monocyte | 0.89 | 2.59 | 0.68 | 0.83 | 0.40 | 0.80 | 426.00 |\n| plasma cell | 0.85 | 2.38 | 0.67 | 0.80 | 0.21 | 0.85 | 345.00 |\n| endothelial cell | 0.85 | 2.70 | 0.64 | 0.79 | 0.50 | 0.84 | 323.00 |\n| endothelial cell of lymphatic vessel | 0.82 | 2.51 | 0.68 | 0.83 | 0.52 | 0.84 | 320.00 |\n| mature NK T cell | 0.82 | 3.07 | 0.66 | 0.79 | 0.38 | 0.80 | 317.00 |\n| T cell | 0.73 | 3.99 | 0.51 | 0.56 | 0.30 | 0.59 | 227.00 |\n| myoepithelial cell | 0.92 | 3.63 | 0.61 | 0.68 | 0.35 | 0.68 | 196.00 |\n| CD4-positive, alpha-beta T cell | 0.46 | 5.79 | 0.50 | 0.60 | 0.21 | 0.72 | 182.00 |\n| pericyte | 0.80 | 3.19 | 0.67 | 0.72 | 0.42 | 0.75 | 146.00 |\n| B cell | 0.35 | 2.73 | 0.59 | 0.77 | 0.43 | 0.75 | 137.00 |\n| neutrophil | 0.90 | 4.36 | 0.61 | 0.59 | 0.35 | 0.77 | 115.00 |\n| ionocyte | 0.83 | 4.53 | 0.61 | 0.63 | 0.39 | 0.72 | 87.00 |\n| salivary gland cell | 0.50 | 3.99 | 0.62 | 0.68 | 0.55 | 0.81 | 45.00 |"
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  }
model.pt CHANGED
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