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scvi-tools
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tabula-sapiens-skin-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -54,10 +54,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 2.33 | 2.31 |
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- | Pearson Correlation | 0.63 | 0.61 |
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- | Spearman Correlation | 0.61 | 0.59 |
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- | R² (R-Squared) | 0.10 | 0.11 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -66,10 +66,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 13.92 |
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  | Pearson Correlation | 0.56 |
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- | Spearman Correlation | 0.61 |
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- | R² (R-Squared) | -1.21 |
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  </details>
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@@ -86,27 +86,27 @@ cell-type.
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | stromal cell | 0.90 | 1.29 | 0.70 | 0.95 | 0.46 | 0.90 | 2943.00 |
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- | endothelial cell | 0.84 | 1.70 | 0.66 | 0.92 | 0.36 | 0.85 | 1309.00 |
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- | CD8-positive, alpha-beta memory T cell | 0.88 | 3.52 | 0.61 | 0.77 | 0.23 | 0.76 | 857.00 |
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- | macrophage | 0.87 | 2.46 | 0.61 | 0.84 | 0.28 | 0.84 | 846.00 |
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- | mast cell | 0.90 | 3.31 | 0.61 | 0.79 | 0.20 | 0.75 | 645.00 |
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- | mature NK T cell | 0.84 | 3.97 | 0.58 | 0.74 | 0.24 | 0.75 | 605.00 |
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- | T cell | 0.91 | 4.45 | 0.56 | 0.70 | 0.22 | 0.73 | 519.00 |
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- | muscle cell | 0.91 | 3.40 | 0.61 | 0.79 | 0.36 | 0.79 | 437.00 |
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- | CD4-positive, alpha-beta memory T cell | 0.83 | 4.39 | 0.60 | 0.69 | 0.23 | 0.71 | 339.00 |
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- | CD1c-positive myeloid dendritic cell | 0.81 | 4.54 | 0.61 | 0.72 | 0.29 | 0.82 | 165.00 |
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- | CD8-positive, alpha-beta cytotoxic T cell | 0.80 | 5.81 | 0.52 | 0.54 | 0.31 | 0.71 | 129.00 |
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- | regulatory T cell | 0.85 | 5.06 | 0.60 | 0.63 | 0.30 | 0.77 | 126.00 |
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- | epithelial cell | 0.69 | 4.50 | 0.61 | 0.72 | 0.35 | 0.71 | 106.00 |
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- | naive thymus-derived CD8-positive, alpha-beta T cell | 0.84 | 5.45 | 0.57 | 0.55 | 0.28 | 0.75 | 88.00 |
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- | naive thymus-derived CD4-positive, alpha-beta T cell | 0.81 | 5.32 | 0.56 | 0.56 | 0.28 | 0.71 | 71.00 |
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- | melanocyte | 0.71 | 6.10 | 0.53 | 0.57 | 0.38 | 0.73 | 64.00 |
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- | CD4-positive helper T cell | 0.78 | 5.73 | 0.54 | 0.54 | 0.30 | 0.73 | 59.00 |
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- | Langerhans cell | 0.70 | 5.94 | 0.54 | 0.56 | 0.37 | 0.75 | 36.00 |
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- | plasma cell | 0.53 | 7.21 | 0.46 | 0.45 | 0.30 | 0.73 | 24.00 |
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- | CD141-positive myeloid dendritic cell | 0.64 | 6.55 | 0.52 | 0.52 | 0.28 | 0.75 | 17.00 |
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- | smooth muscle cell | 0.60 | 5.75 | 0.53 | 0.51 | 0.38 | 0.69 | 13.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 2.33 | 2.33 |
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+ | Pearson Correlation | 0.63 | 0.58 |
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+ | Spearman Correlation | 0.61 | 0.58 |
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+ | R² (R-Squared) | 0.10 | 0.01 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
63
  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 13.85 |
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  | Pearson Correlation | 0.56 |
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+ | Spearman Correlation | 0.62 |
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+ | R² (R-Squared) | -1.14 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | stromal cell | 0.91 | 1.19 | 0.74 | 0.96 | 0.46 | 0.90 | 2943.00 |
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+ | endothelial cell | 0.83 | 1.74 | 0.65 | 0.90 | 0.36 | 0.85 | 1309.00 |
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+ | CD8-positive, alpha-beta memory T cell | 0.87 | 3.45 | 0.62 | 0.77 | 0.23 | 0.76 | 857.00 |
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+ | macrophage | 0.87 | 2.52 | 0.60 | 0.84 | 0.29 | 0.84 | 846.00 |
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+ | mast cell | 0.89 | 3.16 | 0.63 | 0.80 | 0.20 | 0.76 | 645.00 |
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+ | mature NK T cell | 0.85 | 3.92 | 0.58 | 0.74 | 0.24 | 0.74 | 605.00 |
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+ | T cell | 0.89 | 4.37 | 0.57 | 0.70 | 0.22 | 0.73 | 519.00 |
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+ | muscle cell | 0.90 | 3.33 | 0.63 | 0.79 | 0.36 | 0.79 | 437.00 |
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+ | CD4-positive, alpha-beta memory T cell | 0.83 | 4.42 | 0.60 | 0.68 | 0.24 | 0.72 | 339.00 |
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+ | CD1c-positive myeloid dendritic cell | 0.79 | 4.69 | 0.59 | 0.71 | 0.29 | 0.82 | 165.00 |
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+ | CD8-positive, alpha-beta cytotoxic T cell | 0.85 | 5.95 | 0.50 | 0.52 | 0.30 | 0.71 | 129.00 |
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+ | regulatory T cell | 0.87 | 4.92 | 0.61 | 0.64 | 0.30 | 0.77 | 126.00 |
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+ | epithelial cell | 0.70 | 4.68 | 0.58 | 0.71 | 0.36 | 0.71 | 106.00 |
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+ | naive thymus-derived CD8-positive, alpha-beta T cell | 0.84 | 5.66 | 0.55 | 0.55 | 0.30 | 0.75 | 88.00 |
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+ | naive thymus-derived CD4-positive, alpha-beta T cell | 0.79 | 5.44 | 0.55 | 0.55 | 0.29 | 0.71 | 71.00 |
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+ | melanocyte | 0.70 | 6.12 | 0.53 | 0.56 | 0.40 | 0.73 | 64.00 |
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+ | CD4-positive helper T cell | 0.77 | 5.91 | 0.53 | 0.53 | 0.30 | 0.73 | 59.00 |
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+ | Langerhans cell | 0.74 | 5.60 | 0.57 | 0.57 | 0.36 | 0.75 | 36.00 |
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+ | plasma cell | 0.57 | 7.22 | 0.46 | 0.46 | 0.29 | 0.72 | 24.00 |
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+ | CD141-positive myeloid dendritic cell | 0.58 | 6.58 | 0.52 | 0.52 | 0.28 | 0.75 | 17.00 |
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+ | smooth muscle cell | 0.56 | 5.81 | 0.52 | 0.51 | 0.38 | 0.69 | 13.00 |
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  </details>
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