Upload folder using huggingface_hub
Browse files- adata.h5ad +2 -2
- lightning_logs/version_0/events.out.tfevents.1733432720.Yoseflab-R13B.329818.13 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733432962.Yoseflab-R13B.329818.17 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733433331.Yoseflab-R13B.329818.21 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733433912.Yoseflab-R13B.329818.25 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733434700.Yoseflab-R13B.337477.5 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733435405.Yoseflab-R13B.337477.9 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733435854.Yoseflab-R13B.337477.13 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733436752.Yoseflab-R13B.337477.17 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733437019.Yoseflab-R13B.337477.21 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733437295.Yoseflab-R13B.337477.25 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733437668.Yoseflab-R13B.337477.29 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733438245.Yoseflab-R13B.337477.33 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733438915.Yoseflab-R13B.337477.37 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733439378.Yoseflab-R13B.337477.41 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733439507.Yoseflab-R13B.337477.45 +3 -0
- lightning_logs/version_0/events.out.tfevents.1733440288.Yoseflab-R13B.337477.53 +3 -0
- lightning_logs/version_0/hparams.yaml +1 -0
- lightning_logs/version_1/events.out.tfevents.1733434445.Yoseflab-R13B.337477.0 +3 -0
- lightning_logs/version_1/hparams.yaml +1 -0
- lightning_logs/version_2/events.out.tfevents.1733434470.Yoseflab-R13B.337477.1 +3 -0
- lightning_logs/version_2/hparams.yaml +1 -0
- metrics.json +5 -0
- model.pt +2 -2
adata.h5ad
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:09ca319dfb44275329080aa40a5633636a7a2d16fbc8dd61ee8749d80b69df6e
|
3 |
+
size 25953800
|
lightning_logs/version_0/events.out.tfevents.1733432720.Yoseflab-R13B.329818.13
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:effaea80f8d3870dd7d9109b1d7db9234378f3fcb8746add73a338919951ca66
|
3 |
+
size 118080
|
lightning_logs/version_0/events.out.tfevents.1733432962.Yoseflab-R13B.329818.17
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ea5ab7b767ad2debde2f1c2cf913e3a3145cafa9d70c8eacabde88b6032b0a64
|
3 |
+
size 137066
|
lightning_logs/version_0/events.out.tfevents.1733433331.Yoseflab-R13B.329818.21
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:036a63d08218682dd6486f349823f7f97f9439857caee7cee4efdaffa566425e
|
3 |
+
size 280362
|
lightning_logs/version_0/events.out.tfevents.1733433912.Yoseflab-R13B.329818.25
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:973cfef612ee43286d79e603adb94a58de7d7fdd0e99736cd76b76a94528b8f8
|
3 |
+
size 137066
|
lightning_logs/version_0/events.out.tfevents.1733434700.Yoseflab-R13B.337477.5
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:be0fe4f1a0d74d9532104b993b38010a28c9b3779421116e34e623bd6c74dec2
|
3 |
+
size 359470
|
lightning_logs/version_0/events.out.tfevents.1733435405.Yoseflab-R13B.337477.9
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:db0e917cfc9bbcbb0dd24a9ab8ff0888dc83a7c07875cd5c0929ed0f5dcc55a2
|
3 |
+
size 144366
|
lightning_logs/version_0/events.out.tfevents.1733435854.Yoseflab-R13B.337477.13
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:70cf9780f7d01dff65a5a92d7d60d78d151d6aa63c4eb131df2c7ac4a694470f
|
3 |
+
size 432558
|
lightning_logs/version_0/events.out.tfevents.1733436752.Yoseflab-R13B.337477.17
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:54cbed165408fa1a03b105d86e005e462e48a38ceb58792530046e6d280c1dbb
|
3 |
+
size 128306
|
lightning_logs/version_0/events.out.tfevents.1733437019.Yoseflab-R13B.337477.21
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:027fabceed410b1c11cd45d6926dd7056162df9caa679b9be143b07f1c721006
|
3 |
+
size 151666
|
lightning_logs/version_0/events.out.tfevents.1733437295.Yoseflab-R13B.337477.25
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:4cb30203850d145283b5d36cf8167b6ba66dcb97bb28e9da2e51a2b97d33583d
|
3 |
+
size 137066
|
lightning_logs/version_0/events.out.tfevents.1733437668.Yoseflab-R13B.337477.29
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:ea3e0861b22ca0173b3678df899316b52e71be01259f5a766795e7623915731c
|
3 |
+
size 217366
|
lightning_logs/version_0/events.out.tfevents.1733438245.Yoseflab-R13B.337477.33
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:c8c57705530138cfae4a7bef49febf7407e7fef60ce7bf7443632c82d7f083fb
|
3 |
+
size 272894
|
lightning_logs/version_0/events.out.tfevents.1733438915.Yoseflab-R13B.337477.37
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:f27a18672b3349d6958da0a54e95445c32750b84e53ad0e3d1a48b14483142fa
|
3 |
+
size 256792
|
lightning_logs/version_0/events.out.tfevents.1733439378.Yoseflab-R13B.337477.41
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:8de772dfe728d40c51af5649e832ce205a8fa5064970cb6c12ac4c4a6cbbb656
|
3 |
+
size 58190
|
lightning_logs/version_0/events.out.tfevents.1733439507.Yoseflab-R13B.337477.45
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:4134f570b7cf9a58eb4ededd596dc80db87dd5da2f1f609cd8babe4857516275
|
3 |
+
size 156046
|
lightning_logs/version_0/events.out.tfevents.1733440288.Yoseflab-R13B.337477.53
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:b4a1bd22f79ec3e4980d4f85a75203fcc529d00c80a739c2a89a2cdc1bcd164f
|
3 |
+
size 352008
|
lightning_logs/version_0/hparams.yaml
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{}
|
lightning_logs/version_1/events.out.tfevents.1733434445.Yoseflab-R13B.337477.0
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:60f806896b3ad5182b7f47760c0401ee557b9107eaea49609f31d4beb254c228
|
3 |
+
size 4215
|
lightning_logs/version_1/hparams.yaml
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{}
|
lightning_logs/version_2/events.out.tfevents.1733434470.Yoseflab-R13B.337477.1
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:3d43bbf0fc0309259a326b2c1510fd4e8d409e853d801f5dd88fd6ae0c55a8d7
|
3 |
+
size 137066
|
lightning_logs/version_2/hparams.yaml
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{}
|
metrics.json
ADDED
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.73 | 1.81 |\n| Pearson Correlation | 0.83 | 0.80 |\n| Spearman Correlation | 0.77 | 0.76 |\n| R\u00b2 (R-Squared) | 0.45 | 0.39 |",
|
3 |
+
"gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 19.83 |\n| Pearson Correlation | 0.66 |\n| Spearman Correlation | 0.71 |\n| R\u00b2 (R-Squared) | -0.98 |",
|
4 |
+
"diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 0.95 | 1.65 | 0.67 | 0.85 | 0.12 | 0.86 | 4486.00 |\n| memory B cell | 0.95 | 1.17 | 0.57 | 0.93 | 0.34 | 0.87 | 4391.00 |\n| CD8-positive, alpha-beta memory T cell | 0.88 | 1.89 | 0.60 | 0.90 | 0.32 | 0.83 | 3479.00 |\n| classical monocyte | 0.94 | 1.18 | 0.65 | 0.91 | 0.34 | 0.85 | 3450.00 |\n| plasma cell | 0.80 | 0.92 | 0.77 | 0.96 | 0.37 | 0.93 | 2366.00 |\n| mature NK T cell | 0.95 | 2.28 | 0.58 | 0.85 | 0.32 | 0.80 | 1820.00 |\n| CD4-positive, alpha-beta memory T cell | 0.92 | 2.30 | 0.63 | 0.84 | 0.29 | 0.78 | 1463.00 |\n| type I NK T cell | 0.93 | 2.81 | 0.57 | 0.80 | 0.33 | 0.76 | 1038.00 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 0.91 | 2.67 | 0.62 | 0.82 | 0.31 | 0.77 | 1025.00 |\n| macrophage | 0.91 | 2.08 | 0.68 | 0.89 | 0.40 | 0.83 | 892.00 |\n| naive B cell | 0.87 | 3.85 | 0.55 | 0.69 | 0.29 | 0.71 | 478.00 |\n| endothelial cell | 0.79 | 1.80 | 0.79 | 0.93 | 0.56 | 0.91 | 438.00 |\n| naive thymus-derived CD8-positive, alpha-beta T cell | 0.80 | 4.47 | 0.55 | 0.64 | 0.33 | 0.63 | 232.00 |\n| regulatory T cell | 0.80 | 4.65 | 0.54 | 0.67 | 0.39 | 0.74 | 232.00 |\n| erythrocyte | 0.89 | 4.18 | 0.66 | 0.67 | 0.26 | 0.89 | 142.00 |\n| intermediate monocyte | 0.83 | 4.91 | 0.55 | 0.57 | 0.33 | 0.75 | 131.00 |\n| innate lymphoid cell | 0.73 | 5.74 | 0.51 | 0.49 | 0.38 | 0.62 | 90.00 |\n| hematopoietic stem cell | 0.63 | 4.07 | 0.64 | 0.73 | 0.53 | 0.84 | 73.00 |\n| plasmacytoid dendritic cell | 0.59 | 4.66 | 0.60 | 0.53 | 0.37 | 0.70 | 37.00 |\n| CD1c-positive myeloid dendritic cell | 0.61 | 5.44 | 0.55 | 0.43 | 0.39 | 0.63 | 26.00 |\n| platelet | 0.65 | 6.76 | 0.48 | 0.40 | 0.40 | 0.71 | 18.00 |\n| CD141-positive myeloid dendritic cell | 0.51 | 5.56 | 0.56 | 0.51 | 0.40 | 0.67 | 18.00 |"
|
5 |
+
}
|
model.pt
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
-
size
|
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:a5c3cebe615a549265fc8bee41e842fa6df2ad42c7c87abec1391fca37694f0f
|
3 |
+
size 8403069
|