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scvi-tools
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tabula-sapiens-uterus-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  2. lightning_logs/version_0/events.out.tfevents.1733431719.Yoseflab-R13B.329818.9 +3 -0
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  8. lightning_logs/version_0/events.out.tfevents.1733435405.Yoseflab-R13B.337477.9 +3 -0
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  22. lightning_logs/version_2/events.out.tfevents.1733434470.Yoseflab-R13B.337477.1 +3 -0
  23. lightning_logs/version_2/hparams.yaml +1 -0
  24. metrics.json +5 -0
  25. model.pt +2 -2
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 2.41 | 2.43 |\n| Pearson Correlation | 0.72 | 0.71 |\n| Spearman Correlation | 0.72 | 0.71 |\n| R\u00b2 (R-Squared) | 0.45 | 0.41 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 11.55 |\n| Pearson Correlation | 0.59 |\n| Spearman Correlation | 0.61 |\n| R\u00b2 (R-Squared) | -1.46 |",
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+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 0.94 | 0.39 | 0.80 | 0.95 | 0.40 | 0.85 | 3014.00 |\n| endothelial cell | 0.96 | 1.35 | 0.69 | 0.95 | 0.27 | 0.89 | 2077.00 |\n| T cell | 0.89 | 2.38 | 0.67 | 0.88 | 0.35 | 0.82 | 546.00 |\n| vascular associated smooth muscle cell | 0.92 | 3.22 | 0.68 | 0.81 | 0.21 | 0.82 | 390.00 |\n| macrophage | 0.81 | 2.06 | 0.63 | 0.87 | 0.38 | 0.84 | 344.00 |\n| myometrial cell | 0.83 | 3.63 | 0.63 | 0.73 | 0.25 | 0.73 | 199.00 |\n| epithelial cell of uterus | 0.80 | 1.93 | 0.60 | 0.88 | 0.47 | 0.79 | 194.00 |\n| pericyte | 0.83 | 3.88 | 0.62 | 0.66 | 0.30 | 0.61 | 95.00 |\n| endothelial cell of lymphatic vessel | 0.76 | 3.07 | 0.62 | 0.77 | 0.52 | 0.78 | 86.00 |\n| epithelial cell | 0.68 | 2.06 | 0.65 | 0.90 | 0.59 | 0.87 | 68.00 |\n| mature NK T cell | 0.76 | 4.83 | 0.64 | 0.70 | 0.36 | 0.67 | 53.00 |\n| ciliated epithelial cell | 0.54 | 3.57 | 0.64 | 0.81 | 0.52 | 0.78 | 31.00 |\n| leukocyte | 0.44 | 4.20 | 0.66 | 0.71 | 0.45 | 0.69 | 17.00 |"
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