init

.github/environment.yml

@@ -0,0 +1,87 @@
+name: mkdocs
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=main
+  - _openmp_mutex=5.1=1_gnu
+  - attrs=22.2.0=pyh71513ae_0
+  - beautifulsoup4=4.11.1=pyha770c72_0
+  - bleach=5.0.1=pyhd8ed1ab_0
+  - ca-certificates=2022.12.7=ha878542_0
+  - certifi=2022.12.7=pyhd8ed1ab_0
+  - click=8.1.3=unix_pyhd8ed1ab_2
+  - defusedxml=0.7.1=pyhd8ed1ab_0
+  - entrypoints=0.4=pyhd8ed1ab_0
+  - ghp-import=2.1.0=pyhd8ed1ab_0
+  - importlib-metadata=6.0.0=pyha770c72_0
+  - importlib_resources=5.10.2=pyhd8ed1ab_0
+  - jinja2=3.1.2=pyhd8ed1ab_1
+  - jsonschema=4.17.3=pyhd8ed1ab_0
+  - jupyter_client=7.3.4=pyhd8ed1ab_0
+  - jupyter_core=5.1.3=py38h578d9bd_0
+  - jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
+  - jupytext=1.14.4=pyhcff175f_0
+  - ld_impl_linux-64=2.38=h1181459_1
+  - libffi=3.4.2=h6a678d5_6
+  - libgcc-ng=11.2.0=h1234567_1
+  - libgomp=11.2.0=h1234567_1
+  - libsodium=1.0.18=h36c2ea0_1
+  - libstdcxx-ng=11.2.0=h1234567_1
+  - markdown=3.4.1=pyhd8ed1ab_0
+  - markdown-it-py=2.1.0=pyhd8ed1ab_0
+  - markupsafe=2.1.1=py38h0a891b7_1
+  - mdit-py-plugins=0.3.3=pyhd8ed1ab_0
+  - mdurl=0.1.0=pyhd8ed1ab_0
+  - mergedeep=1.3.4=pyhd8ed1ab_0
+  - mistune=0.8.4=pyh1a96a4e_1006
+  - mkdocs=1.3.0=pyhd8ed1ab_0
+  - mkdocs-exclude=1.0.2=pyhd8ed1ab_0
+  - mkdocs-jupyter=0.21.0=pyhd8ed1ab_0
+  - mkdocs-material=8.4.1=pyhd8ed1ab_0
+  - mkdocs-material-extensions=1.0.3=pyhd8ed1ab_2
+  - nbclient=0.7.2=pyhd8ed1ab_0
+  - nbconvert=6.5.0=pyhd8ed1ab_0
+  - nbconvert-core=6.5.0=pyhd8ed1ab_0
+  - nbconvert-pandoc=6.5.0=pyhd8ed1ab_0
+  - nbformat=5.7.3=pyhd8ed1ab_0
+  - ncurses=6.3=h5eee18b_3
+  - nest-asyncio=1.5.6=pyhd8ed1ab_0
+  - openssl=1.1.1s=h7f8727e_0
+  - packaging=23.0=pyhd8ed1ab_0
+  - pandoc=2.19.2=ha770c72_0
+  - pandocfilters=1.5.0=pyhd8ed1ab_0
+  - pip=22.3.1=py38h06a4308_0
+  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
+  - platformdirs=2.6.2=pyhd8ed1ab_0
+  - pygments=2.14.0=pyhd8ed1ab_0
+  - pymdown-extensions=9.9.1=pyhd8ed1ab_0
+  - pyrsistent=0.18.1=py38h0a891b7_1
+  - python=3.8.16=h7a1cb2a_2
+  - python-dateutil=2.8.2=pyhd8ed1ab_0
+  - python-fastjsonschema=2.16.2=pyhd8ed1ab_0
+  - python_abi=3.8=2_cp38
+  - pyyaml=6.0=py38h0a891b7_4
+  - pyyaml-env-tag=0.1=pyhd8ed1ab_0
+  - pyzmq=23.0.0=py38hfc09fa9_0
+  - readline=8.2=h5eee18b_0
+  - setuptools=65.6.3=py38h06a4308_0
+  - six=1.16.0=pyh6c4a22f_0
+  - soupsieve=2.3.2.post1=pyhd8ed1ab_0
+  - sqlite=3.40.1=h5082296_0
+  - tinycss2=1.2.1=pyhd8ed1ab_0
+  - tk=8.6.12=h1ccaba5_0
+  - toml=0.10.2=pyhd8ed1ab_0
+  - tornado=6.1=py38h0a891b7_3
+  - traitlets=5.8.1=pyhd8ed1ab_0
+  - typing-extensions=4.4.0=hd8ed1ab_0
+  - typing_extensions=4.4.0=pyha770c72_0
+  - watchdog=2.2.1=py38h578d9bd_0
+  - webencodings=0.5.1=py_1
+  - wheel=0.37.1=pyhd3eb1b0_0
+  - xz=5.2.10=h5eee18b_1
+  - yaml=0.2.5=h7f98852_2
+  - zeromq=4.3.4=h9c3ff4c_1
+  - zipp=3.11.0=pyhd8ed1ab_0
+  - zlib=1.2.13=h5eee18b_0
+prefix: /home/weiqiang/.local/miniconda3/envs/mkdocs

.github/workflows/docker.yaml

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+name: docker
+
+on:
+  push:
+    branches: master
+
+jobs:
+  main:
+    runs-on: ubuntu-latest
+    steps:
+      -
+        name: Set up QEMU
+        uses: docker/setup-qemu-action@v1
+      -
+        name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+      -
+        name: Login to DockerHub
+        uses: docker/login-action@v1 
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+      -
+        name: Build and push
+        id: docker_build
+        uses: docker/build-push-action@v2
+        with:
+          push: true
+          tags: zhuwq0/deepdenoiser-api:1.0
+      -
+        name: Image digest
+        run: echo ${{ steps.docker_build.outputs.digest }}

.github/workflows/docs.yml

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+name: documentation
+
+on:
+  push:
+    branches: 
+      - master
+      - main
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          submodules: true
+
+      # - uses: actions/setup-python@v2
+      #   with:
+      #     python-version: 3.x
+      # - run: pip install mkdocs-material mkdocs-jupyter
+      # - run: mkdocs gh-deploy --force
+
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          python-version: 3.8
+          miniconda-version: "latest"
+          activate-environment: mkdocs
+          environment-file: .github/environment.yml
+#       - run: conda install mkdocs=1.3.0 mkdocs-material=8.4.1 mkdocs-material-extensions==1.0.3 mkdocs-jupyter=0.21.0 mkdocs-exclude -c conda-forge
+      
+      - name: mkdocs
+        shell: bash -el {0}
+        run: mkdocs gh-deploy --force

.gitignore

@@ -0,0 +1,8 @@
+._*
+*.pyc
+.DS_Store
+log/
+.vscode/
+output/
+*_bak/
+test_data/