import streamlit as st import pydicom import zipfile import os import subprocess subprocess_executed = False # Function to install dependencies @st.cache_resource def install_dependencies(): command = "chmod +x install.sh" subprocess.run(command, shell=True, check=True) command = "./install.sh" subprocess.run(command, shell=True, check=True) # Function to run inference @st.cache_resource def run_inference(): command = "chmod +x inference.sh" subprocess.run(command, shell=True, check=True) command = "./inference.sh" subprocess.run(command, shell=True, check=True) # Function to zip and download files def zip_and_download(directory, zip_filename): zipf = zipfile.ZipFile(zip_filename, 'w', zipfile.ZIP_DEFLATED) for root, _, files in os.walk(directory): for file in files: zipf.write(os.path.join(root, file), os.path.relpath(os.path.join(root, file), directory)) zipf.close() with open(zip_filename, 'rb') as f: bytes_data = f.read() st.download_button(label="Download Outputs", data=bytes_data, file_name=zip_filename, mime="application/zip") # Main Streamlit code def main(): st.write("Upload a ZIP file containing DICOM slices") uploaded_zip_file = st.file_uploader("Upload a .zip file", type=["zip"]) if uploaded_zip_file is not None: try: install_dependencies() temp_dir = "/home/user/app/C2C/temp_dicom_dir" os.makedirs(temp_dir, exist_ok=True) with zipfile.ZipFile(uploaded_zip_file, "r") as zip_ref: zip_ref.extractall(temp_dir) st.success("Zip file uploaded successfully") if st.button("Analyze"): st.success("Analysis started (expected time: 5 mins)") run_inference() outputs_directory = "/home/user/app/C2C/outputs" if os.path.exists(outputs_directory): subdirectories = [subdir for subdir in os.listdir(outputs_directory) if os.path.isdir(os.path.join(outputs_directory, subdir))] first_subdirectory = subdirectories[0] if subdirectories else None if first_subdirectory: subdirectory_path = os.path.join(outputs_directory, first_subdirectory) temp_dicom_dir_path = os.path.join(subdirectory_path, "temp_dicom_dir") video_path = os.path.join(temp_dicom_dir_path, "images/summary/aaa.mp4") image_path = os.path.join(temp_dicom_dir_path, "images/summary/diameter_graph.png") largest_slice = os.path.join(temp_dicom_dir_path, "images/summary/out.png") if os.path.exists(video_path) and os.path.exists(image_path) and os.path.exists(largest_slice): zip_filename = os.path.join(temp_dir, "outputs.zip") zip_and_download(temp_dicom_dir_path, zip_filename) st.title("Largest Slice") st.image(largest_slice, use_column_width=True) st.title("Video") st.video(video_path, format="video/mp4") st.title("Diameter Graph") st.image(image_path, use_column_width=True) else: st.error("Output files not found.") else: st.warning("No subdirectories found inside 'outputs'.") else: st.error("The 'outputs' directory does not exist.") except Exception as e: st.error(f"Error: {str(e)}") if __name__ == "__main__": main()