Arts-of-coding commited on
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25f2d9b
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1 Parent(s): 7a2d43d

Update pages/home.py

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  1. pages/home.py +9 -6
pages/home.py CHANGED
@@ -5,10 +5,13 @@ dash.register_page(__name__, path='/', location="sidebar")
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  layout = html.Div([
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  html.H1('This is the home page for analyzing the corneal cell state meta atlas'),
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- html.Div('Please select the dataset above.'),
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- html.Div('Note that lowly expressed genes have been filtered out, leaving ~17.000 expressed genes to analyse interactively.'),
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- html.Div('Genes can be visualised in a dotplot or in the "custom" tab on the UMAPs.'),
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- #html.Div('TF influence scores can also be visualised in these graphs'),
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- html.Div(html.P(['TF influence scores can also be visualised in these graphs\n', html.Br(), 'Names of cell states: LSC-1 = Limbal stem cells 1; LSC-2 = Limbal stem cells 2; LE = Limbal epithelium; CE = Central epithelium; Cj = Conjunctiva; qSK =Quiescent stromal keratocytes; SK = Stromal keratocytes; TSK = Transitioning stromal keratocytes; CF = Corneal fibroblasts; EC = Endothelial cells; Ves = Vessels; Mel = Melanocytes; IC = Immune cells; nm-cSC = non-myelinating corneal Schwann cells; MC = Mural cells.']))
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- #html.Div('Names of cell states: LSC-1 = Limbal stem cells 1; LSC-2 = Limbal stem cells 2; LE = Limbal epithelium; CE = Central epithelium; Cj = Conjunctiva; qSK =Quiescent stromal keratocytes; SK = Stromal keratocytes; TSK = Transitioning stromal keratocytes; CF = Corneal fibroblasts; EC = Endothelial cells; Ves = Vessels; Mel = Melanocytes; IC = Immune cells; nm-cSC = non-myelinating corneal Schwann cells; MC = Mural cells.'),
 
 
 
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  ])
 
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  layout = html.Div([
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  html.H1('This is the home page for analyzing the corneal cell state meta atlas'),
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+ html.Div('Please click on the corneal meta-atlas link above and click on a tab of interest.'),
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+ html.Div('For an explanation of the tabs, see categories below.'),
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+ html.H1('First tab: UMAP visualisation'),
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+ html.Div('This tab contains two selectable conditions that can be used in combination for visualisation.\n For example if expression of PAX6 across studies needs to be visualised, condition 1 "studies" and condition 2 "PAX6" can be selected.'\n For condition 1 "integrated clusters", "integrated cell states" and "studies" can be selected. \n For condition 2 individual genes, quality control parameters (e.g. n_genes_by_counts) and influence scores can be visualised.),
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+ html.H1('Second tab: Dotplot'),
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+ html.Div('This tab contains visualisation of selected genes in all cell states. \n Multiple genes be added or removed.'),
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+ html.H1('Other notes: genes and cell state names'),
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+ html.Div('Note that lowly expressed genes have been filtered out, leaving ~17.000 expressed genes to analyse interactively.'),
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+ html.Div('Names of cell states: LSC-1 = Limbal stem cells 1; LSC-2 = Limbal stem cells 2; LE = Limbal epithelium; CE = Central epithelium; Cj = Conjunctiva; qSK =Quiescent stromal keratocytes; SK = Stromal keratocytes; TSK = Transitioning stromal keratocytes; CF = Corneal fibroblasts; EC = Endothelial cells; Ves = Vessels; Mel = Melanocytes; IC = Immune cells; nm-cSC = non-myelinating corneal Schwann cells; MC = Mural cells.')
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  ])