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Update app.py
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app.py
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@@ -1,4 +1,4 @@
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import
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import numpy as np
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import matplotlib.pyplot as plt
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import plotly.graph_objects as go
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@@ -7,7 +7,7 @@ from skimage import measure
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from mpl_toolkits.mplot3d.art3d import Poly3DCollection
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from lungmask import LMInferer
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import SimpleITK as sitk
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import
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# --- Lung Segmentation Functions ---
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@@ -56,15 +56,21 @@ def plot_3d_lungs(lungs_volume, threshold=0.5):
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fig.update_layout(scene_aspectmode='data') # Maintain aspect ratio
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return fig
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inputs = gr.
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output = gr.Plot(label="3D Segmented Lungs")
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iface = gr.Interface(
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fn=
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inputs=inputs,
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outputs=output,
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title="3D Lung Segmentation Visualization",
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import os
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import numpy as np
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import matplotlib.pyplot as plt
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import plotly.graph_objects as go
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from mpl_toolkits.mplot3d.art3d import Poly3DCollection
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from lungmask import LMInferer
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import SimpleITK as sitk
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import gradio as gr
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# --- Lung Segmentation Functions ---
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fig.update_layout(scene_aspectmode='data') # Maintain aspect ratio
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return fig
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# --- Gradio Interface ---
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def process_and_visualize(selected_folder):
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if selected_folder not in ["tumor", "lungs"]:
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return "Invalid folder selection." # Handle invalid input
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volume = segment_lungs_from_dicom(selected_folder)
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visualization = plot_3d_lungs(volume)
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return visualization
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inputs = gr.Dropdown(choices=["tumor", "lungs"], label="Select DICOM Folder")
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output = gr.Plot(label="3D Segmented Lungs")
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iface = gr.Interface(
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fn=process_and_visualize,
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inputs=inputs,
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outputs=output,
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title="3D Lung Segmentation Visualization",
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