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Delete tests/test_integration.py
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tests/test_integration.py
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import pytest
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class TestIntegration:
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"""Integration tests for the complete workflow"""
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def test_complete_workflow_text_input(self, sample_medical_text):
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"""Test complete workflow from text input to SOAP output"""
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def mock_complete_workflow(medical_text):
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# Step 1: Validate input
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if not medical_text.strip():
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return "❌ No input provided"
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# Step 2: Process text (mock preprocessing)
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processed_text = medical_text.strip()
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# Step 3: Generate SOAP (mocked)
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soap_sections = [
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"SUBJECTIVE:",
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"Patient reports chest pain for 2 hours.",
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"",
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"OBJECTIVE:",
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"Vital signs show elevated blood pressure.",
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"",
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"ASSESSMENT:",
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"Acute chest pain, rule out cardiac causes.",
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"",
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"PLAN:",
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"Order EKG and cardiac enzymes."
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]
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# Step 4: Format output
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result = "\n".join(soap_sections)
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result += f"\n\n--- Processing Summary ---"
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result += f"\nProcessed {len(medical_text)} characters of medical text."
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result += f"\nGenerated SOAP note with {len(soap_sections)} sections."
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return result
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result = mock_complete_workflow(sample_medical_text)
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assert "SUBJECTIVE:" in result
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assert "OBJECTIVE:" in result
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assert "ASSESSMENT:" in result
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assert "PLAN:" in result
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assert "Processing Summary" in result
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assert "characters of medical text" in result
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def test_workflow_with_image_and_text(self, sample_medical_text, sample_image):
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"""Test workflow with both image and text input"""
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def mock_workflow_with_image(text_input, image_input):
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combined_text = text_input or ""
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if image_input is not None:
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# Mock OCR processing
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ocr_text = "Additional findings: Patient appears anxious, diaphoretic"
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if combined_text:
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combined_text += f"\n\n--- Extracted from image ---\n{ocr_text}"
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else:
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combined_text = ocr_text
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if not combined_text:
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return "❌ No input provided"
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# Mock SOAP generation
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sections = ["SUBJECTIVE", "OBJECTIVE", "ASSESSMENT", "PLAN"]
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soap_content = []
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for section in sections:
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soap_content.append(f"{section}:")
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soap_content.append(f"Content for {section.lower()} section")
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soap_content.append("")
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result = "\n".join(soap_content)
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result += f"\n--- Workflow Summary ---"
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result += f"\nCombined input: {len(combined_text)} characters"
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result += f"\nImage processing: {'Yes' if image_input else 'No'}"
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return result
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result = mock_workflow_with_image(sample_medical_text, sample_image)
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assert "SUBJECTIVE:" in result
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assert "OBJECTIVE:" in result
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assert "ASSESSMENT:" in result
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assert "PLAN:" in result
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assert "Workflow Summary" in result
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assert "Image processing: Yes" in result
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def test_error_recovery_workflow(self):
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"""Test workflow error handling and recovery"""
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def mock_error_recovery_workflow(input_data, simulate_error=False):
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try:
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if simulate_error:
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raise Exception("Simulated processing error")
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if not input_data:
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return "❌ No input provided"
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# Simulate successful processing
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return "✅ SOAP note generated successfully"
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except Exception as e:
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# Error recovery
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error_msg = f"❌ Error occurred: {str(e)}"
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recovery_msg = "\n💡 Please try again with different input or check your image quality."
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return error_msg + recovery_msg
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# Test normal operation
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result = mock_error_recovery_workflow("Valid input")
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assert "✅ SOAP note generated successfully" in result
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# Test error handling
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result = mock_error_recovery_workflow("Input", simulate_error=True)
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assert "❌ Error occurred:" in result
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assert "💡 Please try again" in result
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# Test empty input
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result = mock_error_recovery_workflow("")
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assert "❌ No input provided" in result
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def test_performance_workflow(self, sample_medical_text):
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"""Test workflow performance characteristics"""
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def mock_performance_workflow(input_text):
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import time
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start_time = time.time()
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# Simulate processing steps
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steps = [
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"Validating input",
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"Preprocessing text",
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"Extracting medical entities",
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"Generating SOAP structure",
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"Formatting output"
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]
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processing_log = []
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for i, step in enumerate(steps):
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step_time = time.time()
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processing_log.append(f"Step {i+1}: {step} - {step_time - start_time:.3f}s")
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time.sleep(0.01) # Simulate processing time
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total_time = time.time() - start_time
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result = "Generated SOAP Note\n\n"
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result += "--- Performance Log ---\n"
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result += "\n".join(processing_log)
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result += f"\nTotal processing time: {total_time:.3f}s"
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return result, total_time
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result, processing_time = mock_performance_workflow(sample_medical_text)
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assert "Generated SOAP Note" in result
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assert "Performance Log" in result
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assert "Total processing time:" in result
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assert processing_time > 0
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assert processing_time < 1.0 # Should be fast for mocked version
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def test_batch_processing_workflow(self):
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"""Test batch processing of multiple medical notes"""
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def mock_batch_workflow(medical_notes_list):
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if not medical_notes_list:
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return "❌ No notes provided for batch processing"
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results = []
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for i, notes in enumerate(medical_notes_list):
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if not notes.strip():
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results.append(f"Note {i+1}: ❌ Empty input")
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continue
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# Mock SOAP generation for each note
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soap_result = f"""Note {i+1} - SOAP Generated:
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SUBJECTIVE: Patient presentation from note {i+1}
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OBJECTIVE: Clinical findings
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ASSESSMENT: Medical diagnosis
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PLAN: Treatment approach
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"""
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results.append(soap_result)
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summary = f"\n--- Batch Summary ---"
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summary += f"\nTotal notes processed: {len(medical_notes_list)}"
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summary += f"\nSuccessful: {len([r for r in results if '❌' not in r])}"
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summary += f"\nFailed: {len([r for r in results if '❌' in r])}"
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return "\n".join(results) + summary
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# Test batch processing
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notes_batch = [
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"Patient 1: Chest pain complaint",
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"Patient 2: Diabetes follow-up",
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"", # Empty note
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"Patient 3: Pediatric fever case"
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]
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result = mock_batch_workflow(notes_batch)
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assert "Note 1 - SOAP Generated:" in result
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assert "Note 2 - SOAP Generated:" in result
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assert "Note 3: ❌ Empty input" in result
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assert "Note 4 - SOAP Generated:" in result
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assert "Batch Summary" in result
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assert "Total notes processed: 4" in result
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assert "Successful: 3" in result
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assert "Failed: 1" in result
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def test_gradio_integration(self, sample_medical_text, sample_image):
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"""Test Gradio interface integration"""
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def mock_gradio_integration(text_input, image_input, example_selection=None):
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# Simulate Gradio interface behavior
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if example_selection:
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# Load example
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examples = {
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"chest_pain": "Example chest pain case",
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"diabetes": "Example diabetes case",
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"pediatric": "Example pediatric case"
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}
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text_input = examples.get(example_selection, text_input)
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# Process inputs (same as gradio_generate_soap)
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final_text = text_input or ""
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if image_input is not None:
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ocr_result = "OCR extracted: Patient vital signs documented"
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if final_text:
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final_text += f"\n\n--- From Image ---\n{ocr_result}"
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else:
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final_text = ocr_result
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if not final_text:
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return "❌ Please provide input"
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# Generate SOAP
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soap_output = f"""📋 SOAP NOTE GENERATED
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SUBJECTIVE:
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{final_text[:100]}...
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OBJECTIVE:
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Clinical examination findings documented.
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ASSESSMENT:
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Medical evaluation completed.
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PLAN:
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Treatment recommendations provided.
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--- Generated via Gradio Interface ---
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Input sources: {'Text + Image' if text_input and image_input else 'Text' if text_input else 'Image'}
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Processing timestamp: 2025-01-15 10:30:00
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"""
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return soap_output
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# Test text only
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result = mock_gradio_integration(sample_medical_text, None)
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assert "📋 SOAP NOTE GENERATED" in result
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assert "Input sources: Text" in result
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# Test image only
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result = mock_gradio_integration("", sample_image)
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assert "📋 SOAP NOTE GENERATED" in result
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assert "From Image" in result
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# Test text + image
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result = mock_gradio_integration(sample_medical_text, sample_image)
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assert "Input sources: Text + Image" in result
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# Test example selection
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result = mock_gradio_integration("", None, "chest_pain")
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assert "Example chest pain case" in result
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