Update app.py

app.py

@@ -59,6 +59,7 @@ with st.form('get signature'):
         refdownload=False    
     file_to_lookat=st.file_uploader('VCF upload here',type=[".vcf"],accept_multiple_files=True)
     remove_old_vcf()
+    dl(file_to_lookat)
     sub=st.form_submit_button('submit input')
     
 if sub and file_to_lookat !=[]:   
@@ -72,9 +73,9 @@ if sub and file_to_lookat !=[]:
             urllib.request.urlretrieve('https://dl.dropboxusercontent.com/s/et97ewsct862x7m/references.zip?dl=0','references.zip')
             with zipfile.ZipFile('references.zip', 'r') as zip_ref:
                 zip_ref.extractall(dirtest)
-                seev=glob.glob(dirtest+'/references/chromosomes/tsb/GRCh37/*txt')
-                for i in seev:
-                    st.write(i)
+                #seev=glob.glob(dirtest+'/references/chromosomes/tsb/GRCh37/*txt')
+                #for i in seev:
+                #    st.write(i)
         ##genInstall.install('GRCh37')
     
     if not os.path.exists('input'):
@@ -100,7 +101,6 @@ if sub and file_to_lookat !=[]:
         sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
    
   #show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
-    dl(file_to_lookat)
     
         
     components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)