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Update app.py
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app.py
CHANGED
@@ -205,6 +205,7 @@ with st.form('get signature'):
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else:
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st.write('using reference from here:'+glob.glob(os.path.join(os.path.dirname(SigProfilerMatrixGenerator.__file__),'references/chromosomes/tsb/GRCh3[78]/'))[0])
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refdownload=False
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referencegenome =st.radio('reference',['hg19','GRCh38'])
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file_to_lookat=st.file_uploader('VCF upload here',type=[".vcf","xlsx"],accept_multiple_files=True)
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remove_old_vcf()
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else:
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st.write('using reference from here:'+glob.glob(os.path.join(os.path.dirname(SigProfilerMatrixGenerator.__file__),'references/chromosomes/tsb/GRCh3[78]/'))[0])
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refdownload=False
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no_profiles_only_counts = st.radio('Do Not Perform COSMIC profile analysis',[False, True])
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referencegenome =st.radio('reference',['hg19','GRCh38'])
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file_to_lookat=st.file_uploader('VCF upload here',type=[".vcf","xlsx"],accept_multiple_files=True)
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remove_old_vcf()
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