Eitan177 commited on
Commit
478cf26
·
1 Parent(s): 016e9d7

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +4 -8
app.py CHANGED
@@ -62,7 +62,7 @@ with st.form('get signature'):
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  sub=st.form_submit_button('submit input')
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- if file_to_lookat !=[]:
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  #if st.button('get reference genome'):
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  st.write(os.path.dirname(SigProfilerMatrixGenerator.__file__))
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  dirtest=os.path.dirname(SigProfilerMatrixGenerator.__file__)
@@ -101,13 +101,9 @@ if file_to_lookat !=[]:
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  sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
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  #show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
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- if sub:
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- st.session_state.submitted = True
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-
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- if 'submitted' in st.session_state:
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  dl(file_to_lookat)
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- components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)
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  #show_pdf('output/ID83/Suggested_Solution/COSMIC_ID83_Decomposed_Solution/ID83_Decomposition_Plots.pdf')
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- components.iframe("https://cancer.sanger.ac.uk/signatures/id/",height=3000,width=800)
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- remove_old_vcf()
 
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  sub=st.form_submit_button('submit input')
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+ if file_to_lookat !=[] and sub:
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  #if st.button('get reference genome'):
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  st.write(os.path.dirname(SigProfilerMatrixGenerator.__file__))
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  dirtest=os.path.dirname(SigProfilerMatrixGenerator.__file__)
 
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  sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
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  #show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
 
 
 
 
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  dl(file_to_lookat)
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+ components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)
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  #show_pdf('output/ID83/Suggested_Solution/COSMIC_ID83_Decomposed_Solution/ID83_Decomposition_Plots.pdf')
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+ components.iframe("https://cancer.sanger.ac.uk/signatures/id/",height=3000,width=800)
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+ remove_old_vcf()