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Update app.py
Browse files
app.py
CHANGED
@@ -62,7 +62,7 @@ with st.form('get signature'):
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sub=st.form_submit_button('submit input')
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if file_to_lookat !=[]:
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#if st.button('get reference genome'):
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st.write(os.path.dirname(SigProfilerMatrixGenerator.__file__))
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dirtest=os.path.dirname(SigProfilerMatrixGenerator.__file__)
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@@ -101,13 +101,9 @@ if file_to_lookat !=[]:
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sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
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#show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
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if sub:
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st.session_state.submitted = True
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if 'submitted' in st.session_state:
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dl(file_to_lookat)
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components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)
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#show_pdf('output/ID83/Suggested_Solution/COSMIC_ID83_Decomposed_Solution/ID83_Decomposition_Plots.pdf')
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components.iframe("https://cancer.sanger.ac.uk/signatures/id/",height=3000,width=800)
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remove_old_vcf()
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sub=st.form_submit_button('submit input')
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if file_to_lookat !=[] and sub:
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#if st.button('get reference genome'):
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st.write(os.path.dirname(SigProfilerMatrixGenerator.__file__))
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dirtest=os.path.dirname(SigProfilerMatrixGenerator.__file__)
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sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
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#show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
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dl(file_to_lookat)
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components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)
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#show_pdf('output/ID83/Suggested_Solution/COSMIC_ID83_Decomposed_Solution/ID83_Decomposition_Plots.pdf')
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components.iframe("https://cancer.sanger.ac.uk/signatures/id/",height=3000,width=800)
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remove_old_vcf()
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